Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00309

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00307 and CCNA_00308 are separated by 155 nucleotidesCCNA_00308 and CCNA_00309 are separated by 122 nucleotidesCCNA_00309 and CCNA_00310 are separated by 20 nucleotidesCCNA_00310 and CCNA_00311 overlap by 4 nucleotides CCNA_00307: CCNA_00307 - phospholipid-lipopolysaccharide ABC transporter, at 321,045 to 322,868 _00307 CCNA_00308: CCNA_00308 - protein tyrosine phosphatase CtpA, at 323,024 to 323,689 _00308 CCNA_00309: CCNA_00309 - hypothetical protein, at 323,812 to 324,045 _00309 CCNA_00310: CCNA_00310 - 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase family protein, at 324,066 to 324,845 _00310 CCNA_00311: CCNA_00311 - Zn-dependent protease family protein, at 324,842 to 326,173 _00311 Position (kb) 323 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 322.897 kb on - strandat 322.897 kb on - strandat 322.913 kb on + strandat 322.921 kb on - strandat 322.962 kb on + strandat 323.059 kb on + strandat 323.067 kb on - strandat 323.691 kb on - strandat 323.731 kb on + strandat 323.803 kb on + strandat 323.811 kb on - strandat 323.811 kb on - strandat 324.072 kb on - strandat 324.144 kb on - strand, within CCNA_00310at 324.151 kb on - strand, within CCNA_00310at 324.166 kb on + strand, within CCNA_00310at 324.166 kb on + strand, within CCNA_00310at 324.174 kb on - strand, within CCNA_00310at 324.244 kb on - strand, within CCNA_00310at 324.310 kb on - strand, within CCNA_00310at 324.325 kb on - strand, within CCNA_00310at 324.470 kb on - strand, within CCNA_00310at 324.481 kb on + strand, within CCNA_00310at 324.498 kb on + strand, within CCNA_00310at 324.543 kb on + strand, within CCNA_00310at 324.551 kb on - strand, within CCNA_00310at 324.559 kb on - strand, within CCNA_00310at 324.564 kb on - strand, within CCNA_00310at 324.614 kb on + strand, within CCNA_00310at 324.674 kb on - strand, within CCNA_00310at 324.680 kb on - strand, within CCNA_00310at 324.692 kb on + strand, within CCNA_00310at 324.700 kb on - strand, within CCNA_00310at 324.709 kb on - strand, within CCNA_00310at 324.756 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.799 kb on - strandat 324.800 kb on - strandat 324.806 kb on + strandat 324.830 kb on + strandat 324.830 kb on + strandat 324.830 kb on + strandat 324.833 kb on - strandat 324.838 kb on - strandat 324.838 kb on - strandat 324.838 kb on - strandat 324.929 kb on - strandat 324.987 kb on - strand, within CCNA_00311

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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322,897 - +1.9
322,897 - +1.5
322,913 + -1.4
322,921 - +0.0
322,962 + +0.8
323,059 + -0.6
323,067 - +0.7
323,691 - +0.4
323,731 + +0.4
323,803 + -2.3
323,811 - +1.6
323,811 - +1.3
324,072 - +1.8
324,144 - CCNA_00310 0.10 -0.7
324,151 - CCNA_00310 0.11 -0.2
324,166 + CCNA_00310 0.13 -1.5
324,166 + CCNA_00310 0.13 -1.2
324,174 - CCNA_00310 0.14 -0.7
324,244 - CCNA_00310 0.23 +0.0
324,310 - CCNA_00310 0.31 -0.2
324,325 - CCNA_00310 0.33 +0.1
324,470 - CCNA_00310 0.52 +0.6
324,481 + CCNA_00310 0.53 -0.6
324,498 + CCNA_00310 0.55 -1.1
324,543 + CCNA_00310 0.61 +0.9
324,551 - CCNA_00310 0.62 +0.2
324,559 - CCNA_00310 0.63 +0.8
324,564 - CCNA_00310 0.64 +1.4
324,614 + CCNA_00310 0.70 +1.4
324,674 - CCNA_00310 0.78 +0.6
324,680 - CCNA_00310 0.79 +0.3
324,692 + CCNA_00310 0.80 +0.0
324,700 - CCNA_00310 0.81 +2.0
324,709 - CCNA_00310 0.82 +0.9
324,756 - CCNA_00310 0.88 +0.2
324,760 - CCNA_00310 0.89 +1.0
324,760 - CCNA_00310 0.89 +2.4
324,760 - CCNA_00310 0.89 +1.1
324,760 - CCNA_00310 0.89 +0.7
324,760 - CCNA_00310 0.89 +1.0
324,799 - +2.0
324,800 - +0.3
324,806 + -1.0
324,830 + -0.1
324,830 + -1.1
324,830 + -1.1
324,833 - +0.6
324,838 - +1.2
324,838 - +1.3
324,838 - +1.3
324,929 - +1.4
324,987 - CCNA_00311 0.11 +1.0

Or see this region's nucleotide sequence