Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00307 and CCNA_00308 are separated by 155 nucleotides CCNA_00308 and CCNA_00309 are separated by 122 nucleotides CCNA_00309 and CCNA_00310 are separated by 20 nucleotides CCNA_00310 and CCNA_00311 overlap by 4 nucleotides
CCNA_00307: CCNA_00307 - phospholipid-lipopolysaccharide ABC transporter, at 321,045 to 322,868
_00307
CCNA_00308: CCNA_00308 - protein tyrosine phosphatase CtpA, at 323,024 to 323,689
_00308
CCNA_00309: CCNA_00309 - hypothetical protein, at 323,812 to 324,045
_00309
CCNA_00310: CCNA_00310 - 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase family protein, at 324,066 to 324,845
_00310
CCNA_00311: CCNA_00311 - Zn-dependent protease family protein, at 324,842 to 326,173
_00311
Position (kb)
323
324
325 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 322.897 kb on - strand at 322.897 kb on - strand at 322.913 kb on + strand at 322.921 kb on - strand at 322.962 kb on + strand at 323.059 kb on + strand at 323.067 kb on - strand at 323.691 kb on - strand at 323.731 kb on + strand at 323.803 kb on + strand at 323.811 kb on - strand at 323.811 kb on - strand at 324.072 kb on - strand at 324.144 kb on - strand, within CCNA_00310 at 324.151 kb on - strand, within CCNA_00310 at 324.166 kb on + strand, within CCNA_00310 at 324.166 kb on + strand, within CCNA_00310 at 324.174 kb on - strand, within CCNA_00310 at 324.244 kb on - strand, within CCNA_00310 at 324.310 kb on - strand, within CCNA_00310 at 324.325 kb on - strand, within CCNA_00310 at 324.470 kb on - strand, within CCNA_00310 at 324.481 kb on + strand, within CCNA_00310 at 324.498 kb on + strand, within CCNA_00310 at 324.543 kb on + strand, within CCNA_00310 at 324.551 kb on - strand, within CCNA_00310 at 324.559 kb on - strand, within CCNA_00310 at 324.564 kb on - strand, within CCNA_00310 at 324.614 kb on + strand, within CCNA_00310 at 324.674 kb on - strand, within CCNA_00310 at 324.680 kb on - strand, within CCNA_00310 at 324.692 kb on + strand, within CCNA_00310 at 324.700 kb on - strand, within CCNA_00310 at 324.709 kb on - strand, within CCNA_00310 at 324.756 kb on - strand, within CCNA_00310 at 324.760 kb on - strand, within CCNA_00310 at 324.760 kb on - strand, within CCNA_00310 at 324.760 kb on - strand, within CCNA_00310 at 324.760 kb on - strand, within CCNA_00310 at 324.760 kb on - strand, within CCNA_00310 at 324.799 kb on - strand at 324.800 kb on - strand at 324.806 kb on + strand at 324.830 kb on + strand at 324.830 kb on + strand at 324.830 kb on + strand at 324.833 kb on - strand at 324.838 kb on - strand at 324.838 kb on - strand at 324.838 kb on - strand at 324.929 kb on - strand at 324.987 kb on - strand, within CCNA_00311
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 322,897 - +1.9 322,897 - +1.5 322,913 + -1.4 322,921 - +0.0 322,962 + +0.8 323,059 + -0.6 323,067 - +0.7 323,691 - +0.4 323,731 + +0.4 323,803 + -2.3 323,811 - +1.6 323,811 - +1.3 324,072 - +1.8 324,144 - CCNA_00310 0.10 -0.7 324,151 - CCNA_00310 0.11 -0.2 324,166 + CCNA_00310 0.13 -1.5 324,166 + CCNA_00310 0.13 -1.2 324,174 - CCNA_00310 0.14 -0.7 324,244 - CCNA_00310 0.23 +0.0 324,310 - CCNA_00310 0.31 -0.2 324,325 - CCNA_00310 0.33 +0.1 324,470 - CCNA_00310 0.52 +0.6 324,481 + CCNA_00310 0.53 -0.6 324,498 + CCNA_00310 0.55 -1.1 324,543 + CCNA_00310 0.61 +0.9 324,551 - CCNA_00310 0.62 +0.2 324,559 - CCNA_00310 0.63 +0.8 324,564 - CCNA_00310 0.64 +1.4 324,614 + CCNA_00310 0.70 +1.4 324,674 - CCNA_00310 0.78 +0.6 324,680 - CCNA_00310 0.79 +0.3 324,692 + CCNA_00310 0.80 +0.0 324,700 - CCNA_00310 0.81 +2.0 324,709 - CCNA_00310 0.82 +0.9 324,756 - CCNA_00310 0.88 +0.2 324,760 - CCNA_00310 0.89 +1.0 324,760 - CCNA_00310 0.89 +2.4 324,760 - CCNA_00310 0.89 +1.1 324,760 - CCNA_00310 0.89 +0.7 324,760 - CCNA_00310 0.89 +1.0 324,799 - +2.0 324,800 - +0.3 324,806 + -1.0 324,830 + -0.1 324,830 + -1.1 324,830 + -1.1 324,833 - +0.6 324,838 - +1.2 324,838 - +1.3 324,838 - +1.3 324,929 - +1.4 324,987 - CCNA_00311 0.11 +1.0
Or see this region's nucleotide sequence