Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00159

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00158 and CCNA_00159 overlap by 4 nucleotidesCCNA_00159 and CCNA_00160 are separated by 140 nucleotides CCNA_00158: CCNA_00158 - DNA replication and repair protein recF, at 165,621 to 166,784 _00158 CCNA_00159: CCNA_00159 - DNA gyrase subunit B, at 166,781 to 169,246 _00159 CCNA_00160: CCNA_00160 - methyl-accepting chemotaxis protein, at 169,387 to 170,526 _00160 Position (kb) 166 167 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 165.787 kb on - strand, within CCNA_00158at 165.790 kb on + strand, within CCNA_00158at 165.791 kb on + strand, within CCNA_00158at 165.796 kb on + strand, within CCNA_00158at 165.824 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.845 kb on - strand, within CCNA_00158at 165.847 kb on + strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.857 kb on - strand, within CCNA_00158at 165.864 kb on + strand, within CCNA_00158at 165.881 kb on - strand, within CCNA_00158at 165.900 kb on - strand, within CCNA_00158at 165.903 kb on + strand, within CCNA_00158at 165.911 kb on - strand, within CCNA_00158at 165.912 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.947 kb on + strand, within CCNA_00158at 165.978 kb on + strand, within CCNA_00158at 166.005 kb on - strand, within CCNA_00158at 166.036 kb on + strand, within CCNA_00158at 166.085 kb on + strand, within CCNA_00158at 166.107 kb on + strand, within CCNA_00158at 166.115 kb on - strand, within CCNA_00158at 166.115 kb on - strand, within CCNA_00158at 166.179 kb on - strand, within CCNA_00158at 166.195 kb on + strand, within CCNA_00158at 166.203 kb on - strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.235 kb on - strand, within CCNA_00158at 166.235 kb on - strand, within CCNA_00158at 166.235 kb on - strand, within CCNA_00158at 166.268 kb on + strand, within CCNA_00158at 166.312 kb on + strand, within CCNA_00158at 166.312 kb on + strand, within CCNA_00158at 166.312 kb on + strand, within CCNA_00158at 166.337 kb on - strand, within CCNA_00158at 166.339 kb on - strand, within CCNA_00158at 166.344 kb on + strand, within CCNA_00158at 166.344 kb on + strand, within CCNA_00158at 166.344 kb on + strand, within CCNA_00158at 166.352 kb on - strand, within CCNA_00158at 166.352 kb on - strand, within CCNA_00158at 166.391 kb on + strand, within CCNA_00158at 166.409 kb on + strand, within CCNA_00158at 166.434 kb on + strand, within CCNA_00158at 166.442 kb on - strand, within CCNA_00158at 166.469 kb on + strand, within CCNA_00158at 166.570 kb on - strand, within CCNA_00158at 166.620 kb on + strand, within CCNA_00158at 166.644 kb on + strand, within CCNA_00158at 166.674 kb on + strandat 166.674 kb on + strandat 166.718 kb on + strandat 166.718 kb on + strandat 166.738 kb on - strandat 166.758 kb on + strandat 166.767 kb on + strandat 166.767 kb on + strandat 169.302 kb on + strandat 169.302 kb on + strandat 169.307 kb on + strandat 169.315 kb on - strandat 169.351 kb on + strandat 169.384 kb on + strandat 169.437 kb on + strandat 169.452 kb on + strandat 169.454 kb on + strandat 169.460 kb on - strandat 169.462 kb on - strandat 169.466 kb on + strandat 169.467 kb on - strandat 169.469 kb on - strandat 169.480 kb on - strandat 169.512 kb on + strand, within CCNA_00160at 169.515 kb on - strand, within CCNA_00160at 169.527 kb on + strand, within CCNA_00160at 169.551 kb on + strand, within CCNA_00160at 169.558 kb on - strand, within CCNA_00160at 169.618 kb on + strand, within CCNA_00160at 169.624 kb on + strand, within CCNA_00160at 169.626 kb on - strand, within CCNA_00160at 169.626 kb on - strand, within CCNA_00160at 169.639 kb on + strand, within CCNA_00160at 169.647 kb on + strand, within CCNA_00160at 169.701 kb on + strand, within CCNA_00160at 169.706 kb on + strand, within CCNA_00160at 169.714 kb on - strand, within CCNA_00160at 169.744 kb on + strand, within CCNA_00160at 169.744 kb on + strand, within CCNA_00160at 169.763 kb on + strand, within CCNA_00160at 169.778 kb on + strand, within CCNA_00160at 169.783 kb on + strand, within CCNA_00160at 169.786 kb on - strand, within CCNA_00160at 169.822 kb on + strand, within CCNA_00160at 169.829 kb on + strand, within CCNA_00160at 169.829 kb on + strand, within CCNA_00160at 169.835 kb on - strand, within CCNA_00160at 169.835 kb on - strand, within CCNA_00160at 169.835 kb on - strand, within CCNA_00160at 169.837 kb on - strand, within CCNA_00160at 169.837 kb on - strand, within CCNA_00160at 169.864 kb on + strand, within CCNA_00160at 169.872 kb on - strand, within CCNA_00160at 169.874 kb on + strand, within CCNA_00160at 169.874 kb on + strand, within CCNA_00160at 169.877 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.923 kb on + strand, within CCNA_00160at 169.931 kb on - strand, within CCNA_00160at 169.931 kb on - strand, within CCNA_00160at 169.941 kb on + strand, within CCNA_00160at 169.949 kb on - strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 170.057 kb on + strand, within CCNA_00160at 170.057 kb on + strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.115 kb on + strand, within CCNA_00160at 170.118 kb on - strand, within CCNA_00160at 170.123 kb on - strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.135 kb on - strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.196 kb on - strand, within CCNA_00160at 170.201 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.216 kb on + strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.235 kb on + strand, within CCNA_00160at 170.238 kb on - strand, within CCNA_00160

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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165,787 - CCNA_00158 0.14 -1.4
165,790 + CCNA_00158 0.15 +1.1
165,791 + CCNA_00158 0.15 +1.2
165,796 + CCNA_00158 0.15 +1.1
165,824 + CCNA_00158 0.17 +0.1
165,842 + CCNA_00158 0.19 +0.1
165,842 + CCNA_00158 0.19 +0.6
165,842 + CCNA_00158 0.19 +0.1
165,842 + CCNA_00158 0.19 +0.7
165,845 - CCNA_00158 0.19 -1.2
165,847 + CCNA_00158 0.19 +0.1
165,850 - CCNA_00158 0.20 -1.2
165,850 - CCNA_00158 0.20 -0.2
165,850 - CCNA_00158 0.20 -2.0
165,850 - CCNA_00158 0.20 -1.1
165,850 - CCNA_00158 0.20 -1.4
165,850 - CCNA_00158 0.20 -0.2
165,850 - CCNA_00158 0.20 -0.9
165,850 - CCNA_00158 0.20 -0.8
165,857 - CCNA_00158 0.20 +0.1
165,864 + CCNA_00158 0.21 -0.4
165,881 - CCNA_00158 0.22 -1.2
165,900 - CCNA_00158 0.24 +1.0
165,903 + CCNA_00158 0.24 +0.7
165,911 - CCNA_00158 0.25 -2.0
165,912 - CCNA_00158 0.25 -0.2
165,917 - CCNA_00158 0.25 +1.2
165,917 - CCNA_00158 0.25 -0.8
165,917 - CCNA_00158 0.25 -1.4
165,917 - CCNA_00158 0.25 +0.2
165,947 + CCNA_00158 0.28 -0.7
165,978 + CCNA_00158 0.31 +0.7
166,005 - CCNA_00158 0.33 -1.1
166,036 + CCNA_00158 0.36 +0.8
166,085 + CCNA_00158 0.40 +0.3
166,107 + CCNA_00158 0.42 +0.2
166,115 - CCNA_00158 0.42 +0.1
166,115 - CCNA_00158 0.42 -0.7
166,179 - CCNA_00158 0.48 -1.5
166,195 + CCNA_00158 0.49 -0.3
166,203 - CCNA_00158 0.50 +0.3
166,227 + CCNA_00158 0.52 +0.6
166,227 + CCNA_00158 0.52 -0.4
166,227 + CCNA_00158 0.52 +1.0
166,235 - CCNA_00158 0.53 -0.4
166,235 - CCNA_00158 0.53 -0.3
166,235 - CCNA_00158 0.53 -0.2
166,268 + CCNA_00158 0.56 +1.8
166,312 + CCNA_00158 0.59 +0.1
166,312 + CCNA_00158 0.59 +1.3
166,312 + CCNA_00158 0.59 +1.2
166,337 - CCNA_00158 0.62 -0.7
166,339 - CCNA_00158 0.62 -0.6
166,344 + CCNA_00158 0.62 -0.5
166,344 + CCNA_00158 0.62 -0.2
166,344 + CCNA_00158 0.62 -0.6
166,352 - CCNA_00158 0.63 -1.4
166,352 - CCNA_00158 0.63 -0.7
166,391 + CCNA_00158 0.66 +1.1
166,409 + CCNA_00158 0.68 +2.3
166,434 + CCNA_00158 0.70 -0.2
166,442 - CCNA_00158 0.71 -2.2
166,469 + CCNA_00158 0.73 -0.3
166,570 - CCNA_00158 0.82 -1.9
166,620 + CCNA_00158 0.86 +2.1
166,644 + CCNA_00158 0.88 +0.7
166,674 + -0.0
166,674 + -0.7
166,718 + -0.2
166,718 + -1.0
166,738 - +0.8
166,758 + +0.2
166,767 + +1.5
166,767 + +0.8
169,302 + +1.3
169,302 + +1.0
169,307 + +0.7
169,315 - -0.4
169,351 + +1.3
169,384 + -0.8
169,437 + +1.4
169,452 + +0.3
169,454 + +1.3
169,460 - +1.0
169,462 - -0.8
169,466 + +0.2
169,467 - +0.8
169,469 - +1.3
169,480 - -0.4
169,512 + CCNA_00160 0.11 -0.6
169,515 - CCNA_00160 0.11 +0.8
169,527 + CCNA_00160 0.12 +2.7
169,551 + CCNA_00160 0.14 +0.5
169,558 - CCNA_00160 0.15 -0.6
169,618 + CCNA_00160 0.20 +0.8
169,624 + CCNA_00160 0.21 +0.7
169,626 - CCNA_00160 0.21 -0.3
169,626 - CCNA_00160 0.21 -2.4
169,639 + CCNA_00160 0.22 -0.4
169,647 + CCNA_00160 0.23 +0.4
169,701 + CCNA_00160 0.28 +0.1
169,706 + CCNA_00160 0.28 +0.8
169,714 - CCNA_00160 0.29 +0.5
169,744 + CCNA_00160 0.31 +0.4
169,744 + CCNA_00160 0.31 +1.2
169,763 + CCNA_00160 0.33 -0.0
169,778 + CCNA_00160 0.34 -1.0
169,783 + CCNA_00160 0.35 +0.6
169,786 - CCNA_00160 0.35 -0.7
169,822 + CCNA_00160 0.38 +0.4
169,829 + CCNA_00160 0.39 +2.9
169,829 + CCNA_00160 0.39 +1.8
169,835 - CCNA_00160 0.39 +1.3
169,835 - CCNA_00160 0.39 +0.3
169,835 - CCNA_00160 0.39 -1.4
169,837 - CCNA_00160 0.39 -0.6
169,837 - CCNA_00160 0.39 -2.6
169,864 + CCNA_00160 0.42 +0.4
169,872 - CCNA_00160 0.43 -0.1
169,874 + CCNA_00160 0.43 -0.3
169,874 + CCNA_00160 0.43 -1.6
169,877 - CCNA_00160 0.43 -0.2
169,882 - CCNA_00160 0.43 -0.1
169,882 - CCNA_00160 0.43 +0.6
169,882 - CCNA_00160 0.43 -2.0
169,923 + CCNA_00160 0.47 -0.5
169,931 - CCNA_00160 0.48 -2.6
169,931 - CCNA_00160 0.48 -0.5
169,941 + CCNA_00160 0.49 -0.4
169,949 - CCNA_00160 0.49 +1.4
169,978 + CCNA_00160 0.52 +0.7
169,978 + CCNA_00160 0.52 +0.8
169,978 + CCNA_00160 0.52 +1.2
169,978 + CCNA_00160 0.52 +0.3
169,986 - CCNA_00160 0.53 +0.2
169,986 - CCNA_00160 0.53 -1.2
169,986 - CCNA_00160 0.53 -0.2
170,057 + CCNA_00160 0.59 -0.7
170,057 + CCNA_00160 0.59 -0.7
170,065 - CCNA_00160 0.59 -0.8
170,065 - CCNA_00160 0.59 +0.6
170,065 - CCNA_00160 0.59 +0.3
170,068 + CCNA_00160 0.60 +0.4
170,068 + CCNA_00160 0.60 +0.4
170,068 + CCNA_00160 0.60 -0.2
170,115 + CCNA_00160 0.64 -0.1
170,118 - CCNA_00160 0.64 -0.4
170,123 - CCNA_00160 0.65 -1.0
170,125 + CCNA_00160 0.65 +0.2
170,125 + CCNA_00160 0.65 +0.7
170,125 + CCNA_00160 0.65 +0.8
170,135 - CCNA_00160 0.66 -2.0
170,194 + CCNA_00160 0.71 +0.1
170,194 + CCNA_00160 0.71 -0.0
170,194 + CCNA_00160 0.71 +1.1
170,194 + CCNA_00160 0.71 +0.8
170,196 - CCNA_00160 0.71 +1.0
170,201 - CCNA_00160 0.71 +0.1
170,202 - CCNA_00160 0.71 -1.3
170,202 - CCNA_00160 0.71 +1.0
170,202 - CCNA_00160 0.71 -2.9
170,202 - CCNA_00160 0.71 -1.2
170,202 - CCNA_00160 0.71 -0.8
170,216 + CCNA_00160 0.73 +0.9
170,230 + CCNA_00160 0.74 +0.6
170,235 + CCNA_00160 0.74 +0.2
170,238 - CCNA_00160 0.75 -2.7

Or see this region's nucleotide sequence