Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00084 and CCNA_00085 are separated by 12 nucleotides CCNA_00085 and CCNA_00086 are separated by 53 nucleotides CCNA_00086 and CCNA_00087 are separated by 337 nucleotides
CCNA_00084: CCNA_00084 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 89,053 to 90,642
_00084
CCNA_00085: CCNA_00085 - dienelactone hydrolase-related protein, at 90,655 to 91,413
_00085
CCNA_00086: CCNA_00086 - NAD-specific glutamate dehydrogenase GdhZ, at 91,467 to 96,290
_00086
CCNA_00087: CCNA_00087 - conserved membrane spanning protein, at 96,628 to 97,737
_00087
Position (kb) 91
92
93
94
95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 90.482 kb on + strand, within CCNA_00084 at 90.507 kb on + strand at 90.566 kb on + strand at 90.574 kb on - strand at 90.583 kb on - strand at 90.618 kb on - strand at 90.647 kb on + strand at 90.647 kb on + strand at 90.655 kb on - strand at 90.655 kb on - strand at 90.708 kb on + strand at 90.708 kb on + strand at 90.708 kb on + strand at 90.708 kb on + strand at 90.708 kb on + strand at 90.708 kb on + strand at 90.716 kb on - strand at 90.716 kb on - strand at 90.716 kb on - strand at 90.742 kb on + strand, within CCNA_00085 at 90.751 kb on - strand, within CCNA_00085 at 90.805 kb on + strand, within CCNA_00085 at 90.909 kb on + strand, within CCNA_00085 at 90.922 kb on + strand at 90.927 kb on + strand, within CCNA_00085 at 90.937 kb on + strand, within CCNA_00085 at 90.960 kb on + strand, within CCNA_00085 at 90.960 kb on + strand, within CCNA_00085 at 90.963 kb on - strand, within CCNA_00085 at 90.980 kb on - strand, within CCNA_00085 at 91.002 kb on - strand, within CCNA_00085 at 91.018 kb on + strand, within CCNA_00085 at 91.018 kb on + strand, within CCNA_00085 at 91.018 kb on + strand, within CCNA_00085 at 91.018 kb on + strand, within CCNA_00085 at 91.018 kb on + strand, within CCNA_00085 at 91.018 kb on + strand, within CCNA_00085 at 91.018 kb on + strand, within CCNA_00085 at 91.026 kb on - strand, within CCNA_00085 at 91.026 kb on - strand, within CCNA_00085 at 91.026 kb on - strand, within CCNA_00085 at 91.026 kb on - strand, within CCNA_00085 at 91.026 kb on - strand, within CCNA_00085 at 91.034 kb on - strand, within CCNA_00085 at 91.036 kb on - strand, within CCNA_00085 at 91.039 kb on + strand, within CCNA_00085 at 91.039 kb on + strand, within CCNA_00085 at 91.047 kb on - strand, within CCNA_00085 at 91.063 kb on + strand, within CCNA_00085 at 91.063 kb on + strand, within CCNA_00085 at 91.068 kb on + strand, within CCNA_00085 at 91.073 kb on + strand, within CCNA_00085 at 91.076 kb on - strand, within CCNA_00085 at 91.086 kb on - strand, within CCNA_00085 at 91.101 kb on + strand, within CCNA_00085 at 91.101 kb on + strand, within CCNA_00085 at 91.101 kb on + strand, within CCNA_00085 at 91.101 kb on + strand, within CCNA_00085 at 91.101 kb on + strand, within CCNA_00085 at 91.101 kb on + strand, within CCNA_00085 at 91.109 kb on - strand, within CCNA_00085 at 91.109 kb on - strand, within CCNA_00085 at 91.119 kb on + strand, within CCNA_00085 at 91.119 kb on + strand, within CCNA_00085 at 91.122 kb on - strand, within CCNA_00085 at 91.128 kb on - strand, within CCNA_00085 at 91.163 kb on + strand, within CCNA_00085 at 91.168 kb on + strand, within CCNA_00085 at 91.168 kb on + strand, within CCNA_00085 at 91.168 kb on + strand, within CCNA_00085 at 91.176 kb on - strand, within CCNA_00085 at 91.176 kb on - strand, within CCNA_00085 at 91.178 kb on + strand, within CCNA_00085 at 91.216 kb on - strand, within CCNA_00085 at 91.217 kb on - strand, within CCNA_00085 at 91.223 kb on + strand, within CCNA_00085 at 91.223 kb on + strand, within CCNA_00085 at 91.231 kb on - strand, within CCNA_00085 at 91.231 kb on - strand, within CCNA_00085 at 91.231 kb on - strand, within CCNA_00085 at 91.277 kb on - strand, within CCNA_00085 at 91.334 kb on + strand, within CCNA_00085 at 91.342 kb on - strand at 91.352 kb on + strand at 91.370 kb on - strand at 91.380 kb on - strand at 91.380 kb on - strand at 91.380 kb on - strand at 91.380 kb on - strand at 91.408 kb on + strand at 91.454 kb on + strand at 91.462 kb on - strand at 91.462 kb on - strand at 91.464 kb on + strand at 91.472 kb on - strand at 91.472 kb on - strand at 91.474 kb on + strand at 91.506 kb on - strand at 91.673 kb on - strand at 91.860 kb on - strand at 92.004 kb on - strand, within CCNA_00086 at 96.363 kb on + strand at 96.366 kb on - strand at 96.428 kb on - strand at 96.430 kb on - strand at 96.537 kb on + strand at 96.537 kb on + strand at 96.545 kb on - strand at 96.545 kb on - strand at 96.550 kb on - strand at 96.555 kb on - strand at 96.586 kb on + strand at 96.586 kb on + strand at 96.586 kb on + strand at 96.594 kb on - strand at 96.594 kb on - strand at 96.613 kb on + strand at 96.621 kb on - strand at 96.666 kb on - strand at 96.666 kb on - strand at 96.670 kb on + strand at 96.670 kb on + strand at 96.675 kb on + strand at 96.678 kb on - strand at 96.678 kb on - strand at 96.678 kb on - strand at 96.695 kb on - strand at 96.719 kb on + strand at 96.719 kb on + strand at 96.719 kb on + strand at 96.727 kb on - strand at 96.729 kb on + strand at 96.737 kb on - strand at 96.737 kb on - strand at 96.760 kb on - strand, within CCNA_00087 at 96.787 kb on + strand, within CCNA_00087 at 96.796 kb on - strand, within CCNA_00087 at 96.809 kb on + strand, within CCNA_00087 at 96.919 kb on - strand, within CCNA_00087 at 96.922 kb on - strand, within CCNA_00087 at 96.955 kb on - strand, within CCNA_00087 at 96.994 kb on + strand, within CCNA_00087 at 97.034 kb on + strand, within CCNA_00087 at 97.051 kb on + strand, within CCNA_00087 at 97.075 kb on + strand, within CCNA_00087 at 97.118 kb on + strand, within CCNA_00087 at 97.131 kb on + strand, within CCNA_00087 at 97.131 kb on + strand, within CCNA_00087 at 97.134 kb on - strand, within CCNA_00087 at 97.139 kb on - strand, within CCNA_00087 at 97.247 kb on - strand, within CCNA_00087 at 97.253 kb on - strand, within CCNA_00087 at 97.255 kb on + strand, within CCNA_00087 at 97.285 kb on + strand, within CCNA_00087 at 97.286 kb on - strand, within CCNA_00087
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 90,482 + CCNA_00084 0.90 -3.0 90,507 + -3.5 90,566 + -2.0 90,574 - -0.1 90,583 - +1.5 90,618 - -1.2 90,647 + +0.2 90,647 + +0.9 90,655 - -0.6 90,655 - +1.7 90,708 + +4.0 90,708 + +0.5 90,708 + +1.9 90,708 + -0.5 90,708 + +0.1 90,708 + +2.9 90,716 - +0.1 90,716 - -0.7 90,716 - -1.3 90,742 + CCNA_00085 0.11 +1.0 90,751 - CCNA_00085 0.13 +1.3 90,805 + CCNA_00085 0.20 +0.8 90,909 + CCNA_00085 0.33 +1.2 90,922 + +1.9 90,927 + CCNA_00085 0.36 +0.4 90,937 + CCNA_00085 0.37 +0.4 90,960 + CCNA_00085 0.40 +1.5 90,960 + CCNA_00085 0.40 +0.7 90,963 - CCNA_00085 0.41 +0.9 90,980 - CCNA_00085 0.43 +0.1 91,002 - CCNA_00085 0.46 +0.1 91,018 + CCNA_00085 0.48 +1.2 91,018 + CCNA_00085 0.48 +1.6 91,018 + CCNA_00085 0.48 +3.2 91,018 + CCNA_00085 0.48 +1.3 91,018 + CCNA_00085 0.48 +1.3 91,018 + CCNA_00085 0.48 +1.1 91,018 + CCNA_00085 0.48 +1.3 91,026 - CCNA_00085 0.49 -0.3 91,026 - CCNA_00085 0.49 +0.1 91,026 - CCNA_00085 0.49 -0.5 91,026 - CCNA_00085 0.49 -0.1 91,026 - CCNA_00085 0.49 +0.8 91,034 - CCNA_00085 0.50 +0.9 91,036 - CCNA_00085 0.50 -0.1 91,039 + CCNA_00085 0.51 +0.3 91,039 + CCNA_00085 0.51 -0.2 91,047 - CCNA_00085 0.52 +1.2 91,063 + CCNA_00085 0.54 +0.6 91,063 + CCNA_00085 0.54 +1.2 91,068 + CCNA_00085 0.54 +0.5 91,073 + CCNA_00085 0.55 +1.2 91,076 - CCNA_00085 0.55 +0.6 91,086 - CCNA_00085 0.57 +0.9 91,101 + CCNA_00085 0.59 +0.5 91,101 + CCNA_00085 0.59 -0.4 91,101 + CCNA_00085 0.59 +1.1 91,101 + CCNA_00085 0.59 +0.3 91,101 + CCNA_00085 0.59 -0.7 91,101 + CCNA_00085 0.59 +0.9 91,109 - CCNA_00085 0.60 -0.3 91,109 - CCNA_00085 0.60 -0.1 91,119 + CCNA_00085 0.61 +1.2 91,119 + CCNA_00085 0.61 +0.7 91,122 - CCNA_00085 0.62 +0.7 91,128 - CCNA_00085 0.62 +1.2 91,163 + CCNA_00085 0.67 -0.8 91,168 + CCNA_00085 0.68 +0.8 91,168 + CCNA_00085 0.68 +0.9 91,168 + CCNA_00085 0.68 -0.9 91,176 - CCNA_00085 0.69 -0.2 91,176 - CCNA_00085 0.69 +0.4 91,178 + CCNA_00085 0.69 +0.6 91,216 - CCNA_00085 0.74 +1.7 91,217 - CCNA_00085 0.74 +1.0 91,223 + CCNA_00085 0.75 +1.1 91,223 + CCNA_00085 0.75 +1.3 91,231 - CCNA_00085 0.76 +0.8 91,231 - CCNA_00085 0.76 +0.3 91,231 - CCNA_00085 0.76 +3.9 91,277 - CCNA_00085 0.82 +0.2 91,334 + CCNA_00085 0.89 +0.5 91,342 - +1.3 91,352 + +0.6 91,370 - +0.7 91,380 - +1.3 91,380 - +0.5 91,380 - +1.1 91,380 - +1.0 91,408 + +2.7 91,454 + +1.2 91,462 - +1.7 91,462 - +1.2 91,464 + +0.9 91,472 - +1.0 91,472 - +2.5 91,474 + -0.7 91,506 - +1.0 91,673 - +4.5 91,860 - +1.2 92,004 - CCNA_00086 0.11 +1.5 96,363 + +0.1 96,366 - +0.3 96,428 - +0.1 96,430 - +0.7 96,537 + -1.8 96,537 + -1.8 96,545 - +1.2 96,545 - +1.2 96,550 - +0.7 96,555 - +1.5 96,586 + +0.3 96,586 + -2.3 96,586 + -1.6 96,594 - +0.8 96,594 - +0.9 96,613 + -3.3 96,621 - -1.6 96,666 - -0.1 96,666 - -0.4 96,670 + +0.9 96,670 + +1.8 96,675 + -1.4 96,678 - -0.3 96,678 - -0.0 96,678 - +0.5 96,695 - -0.0 96,719 + -1.5 96,719 + -2.1 96,719 + -0.5 96,727 - -1.3 96,729 + -0.9 96,737 - +0.3 96,737 - +1.7 96,760 - CCNA_00087 0.12 -1.0 96,787 + CCNA_00087 0.14 -2.2 96,796 - CCNA_00087 0.15 -0.8 96,809 + CCNA_00087 0.16 +0.6 96,919 - CCNA_00087 0.26 -0.0 96,922 - CCNA_00087 0.26 -0.7 96,955 - CCNA_00087 0.29 +0.8 96,994 + CCNA_00087 0.33 -0.3 97,034 + CCNA_00087 0.37 -1.1 97,051 + CCNA_00087 0.38 -3.2 97,075 + CCNA_00087 0.40 -2.6 97,118 + CCNA_00087 0.44 -1.0 97,131 + CCNA_00087 0.45 -0.8 97,131 + CCNA_00087 0.45 -3.3 97,134 - CCNA_00087 0.46 -0.2 97,139 - CCNA_00087 0.46 -0.2 97,247 - CCNA_00087 0.56 -1.3 97,253 - CCNA_00087 0.56 -0.4 97,255 + CCNA_00087 0.56 -1.2 97,285 + CCNA_00087 0.59 -1.4 97,286 - CCNA_00087 0.59 +3.5
Or see this region's nucleotide sequence