Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00062

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00061 and CCNA_00062 are separated by 173 nucleotidesCCNA_00062 and CCNA_03913 are separated by 78 nucleotidesCCNA_03913 and CCNA_00063 are separated by 41 nucleotides CCNA_00061: CCNA_00061 - cytochrome p450, at 61,885 to 63,153 _00061 CCNA_00062: CCNA_00062 - tryptophanyl-tRNA synthetase, at 63,327 to 64,361 _00062 CCNA_03913: CCNA_03913 - hypothetical protein, at 64,440 to 64,487 _03913 CCNA_00063: CCNA_00063 - MviN-family integral membrane protein, at 64,529 to 66,091 _00063 Position (kb) 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 62.363 kb on - strand, within CCNA_00061at 62.375 kb on + strand, within CCNA_00061at 62.411 kb on - strand, within CCNA_00061at 62.425 kb on + strand, within CCNA_00061at 62.435 kb on + strand, within CCNA_00061at 62.435 kb on + strand, within CCNA_00061at 62.443 kb on - strand, within CCNA_00061at 62.443 kb on - strand, within CCNA_00061at 62.443 kb on - strand, within CCNA_00061at 62.443 kb on - strand, within CCNA_00061at 62.458 kb on + strand, within CCNA_00061at 62.476 kb on - strand, within CCNA_00061at 62.505 kb on + strand, within CCNA_00061at 62.563 kb on - strand, within CCNA_00061at 62.589 kb on + strand, within CCNA_00061at 62.630 kb on - strand, within CCNA_00061at 62.683 kb on - strand, within CCNA_00061at 62.699 kb on + strand, within CCNA_00061at 62.706 kb on - strand, within CCNA_00061at 62.707 kb on - strand, within CCNA_00061at 62.707 kb on - strand, within CCNA_00061at 62.709 kb on + strand, within CCNA_00061at 62.717 kb on - strand, within CCNA_00061at 62.717 kb on - strand, within CCNA_00061at 62.717 kb on - strand, within CCNA_00061at 62.729 kb on + strand, within CCNA_00061at 62.736 kb on + strand, within CCNA_00061at 62.737 kb on - strand, within CCNA_00061at 62.742 kb on + strand, within CCNA_00061at 62.747 kb on + strand, within CCNA_00061at 62.795 kb on + strand, within CCNA_00061at 62.805 kb on - strand, within CCNA_00061at 62.870 kb on + strand, within CCNA_00061at 62.892 kb on + strand, within CCNA_00061at 62.931 kb on + strand, within CCNA_00061at 62.939 kb on - strand, within CCNA_00061at 62.939 kb on - strand, within CCNA_00061at 62.946 kb on + strand, within CCNA_00061at 62.946 kb on + strand, within CCNA_00061at 62.993 kb on + strand, within CCNA_00061at 63.021 kb on + strand, within CCNA_00061at 63.022 kb on - strand, within CCNA_00061at 63.029 kb on - strandat 63.029 kb on - strandat 63.070 kb on - strandat 63.081 kb on + strandat 63.081 kb on + strandat 63.081 kb on + strandat 63.090 kb on + strandat 63.147 kb on + strandat 63.147 kb on + strandat 63.147 kb on + strandat 63.147 kb on + strandat 63.155 kb on - strandat 63.155 kb on - strandat 63.157 kb on + strandat 63.189 kb on - strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.206 kb on - strandat 63.239 kb on - strandat 63.276 kb on - strandat 63.299 kb on - strandat 63.327 kb on - strandat 64.363 kb on + strandat 64.384 kb on + strandat 64.450 kb on - strand, within CCNA_03913at 64.500 kb on + strandat 64.502 kb on + strandat 64.502 kb on + strandat 64.502 kb on + strandat 64.510 kb on - strandat 64.510 kb on - strandat 64.510 kb on - strandat 64.510 kb on - strandat 64.512 kb on + strandat 64.520 kb on - strandat 64.520 kb on - strandat 64.520 kb on - strandat 64.525 kb on - strandat 64.525 kb on - strandat 64.530 kb on - strandat 64.557 kb on + strandat 64.560 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.581 kb on - strandat 64.581 kb on - strandat 64.581 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.649 kb on + strandat 64.649 kb on + strandat 64.657 kb on - strandat 64.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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62,363 - CCNA_00061 0.38 -0.9
62,375 + CCNA_00061 0.39 -0.7
62,411 - CCNA_00061 0.41 -1.2
62,425 + CCNA_00061 0.43 +0.6
62,435 + CCNA_00061 0.43 -0.3
62,435 + CCNA_00061 0.43 -1.9
62,443 - CCNA_00061 0.44 +0.7
62,443 - CCNA_00061 0.44 -1.5
62,443 - CCNA_00061 0.44 -1.1
62,443 - CCNA_00061 0.44 -0.2
62,458 + CCNA_00061 0.45 -2.8
62,476 - CCNA_00061 0.47 -0.1
62,505 + CCNA_00061 0.49 -0.1
62,563 - CCNA_00061 0.53 -0.1
62,589 + CCNA_00061 0.55 +0.9
62,630 - CCNA_00061 0.59 +0.3
62,683 - CCNA_00061 0.63 -1.0
62,699 + CCNA_00061 0.64 +2.3
62,706 - CCNA_00061 0.65 -0.7
62,707 - CCNA_00061 0.65 +0.7
62,707 - CCNA_00061 0.65 -0.2
62,709 + CCNA_00061 0.65 -0.3
62,717 - CCNA_00061 0.66 -0.0
62,717 - CCNA_00061 0.66 -1.2
62,717 - CCNA_00061 0.66 -0.3
62,729 + CCNA_00061 0.67 -1.8
62,736 + CCNA_00061 0.67 +0.3
62,737 - CCNA_00061 0.67 -0.9
62,742 + CCNA_00061 0.68 -1.7
62,747 + CCNA_00061 0.68 +0.2
62,795 + CCNA_00061 0.72 -0.3
62,805 - CCNA_00061 0.72 -1.0
62,870 + CCNA_00061 0.78 +0.0
62,892 + CCNA_00061 0.79 -1.7
62,931 + CCNA_00061 0.82 -0.3
62,939 - CCNA_00061 0.83 -0.1
62,939 - CCNA_00061 0.83 +0.3
62,946 + CCNA_00061 0.84 +0.5
62,946 + CCNA_00061 0.84 +0.1
62,993 + CCNA_00061 0.87 -1.5
63,021 + CCNA_00061 0.90 +0.3
63,022 - CCNA_00061 0.90 -0.3
63,029 - +0.5
63,029 - -0.3
63,070 - -0.2
63,081 + +0.2
63,081 + +1.3
63,081 + +0.9
63,090 + +0.8
63,147 + +0.2
63,147 + +1.1
63,147 + -0.1
63,147 + +0.5
63,155 - -0.5
63,155 - -1.1
63,157 + +0.7
63,189 - +0.8
63,198 + +0.7
63,198 + -0.9
63,198 + +1.2
63,198 + -0.0
63,206 - +0.2
63,239 - +1.2
63,276 - +0.5
63,299 - +1.2
63,327 - +1.2
64,363 + +1.9
64,384 + +0.8
64,450 - CCNA_03913 0.21 +0.1
64,500 + +1.5
64,502 + +0.7
64,502 + -0.1
64,502 + +0.1
64,510 - +1.9
64,510 - +1.3
64,510 - +0.1
64,510 - +0.6
64,512 + -1.0
64,520 - +0.5
64,520 - +0.5
64,520 - -1.1
64,525 - -0.3
64,525 - +0.3
64,530 - +0.5
64,557 + -1.0
64,560 - +1.2
64,565 - +1.1
64,565 - +1.2
64,565 - +0.1
64,565 - +1.1
64,565 - +0.7
64,565 - -0.0
64,565 - +1.1
64,581 - +1.4
64,581 - +0.8
64,581 - +0.7
64,613 - +0.5
64,613 - +1.3
64,613 - +0.5
64,613 - +1.9
64,613 - +0.7
64,613 - +0.2
64,613 - +0.5
64,613 - +0.5
64,613 - +0.5
64,613 - -0.0
64,613 - +1.3
64,613 - +0.2
64,613 - +0.6
64,649 + -1.0
64,649 + -3.0
64,657 - -2.0
64,670 - -0.4

Or see this region's nucleotide sequence