Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23495 and CA265_RS23500 are separated by 79 nucleotides CA265_RS23500 and CA265_RS23505 are separated by 3 nucleotides CA265_RS23505 and CA265_RS23510 are separated by 19 nucleotides
CA265_RS23495: CA265_RS23495 - flagellar motor protein MotA, at 5,747,622 to 5,748,452
_RS23495
CA265_RS23500: CA265_RS23500 - biopolymer transporter ExbD, at 5,748,532 to 5,749,146
_RS23500
CA265_RS23505: CA265_RS23505 - biopolymer transporter ExbD, at 5,749,150 to 5,749,656
_RS23505
CA265_RS23510: CA265_RS23510 - energy transducer TonB, at 5,749,676 to 5,750,494
_RS23510
Position (kb) 5748
5749
5750 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5747.542 kb on + strand at 5747.558 kb on + strand at 5747.561 kb on + strand at 5748.437 kb on + strand at 5748.437 kb on + strand at 5748.528 kb on + strand at 5749.160 kb on + strand at 5749.197 kb on + strand at 5749.217 kb on + strand, within CA265_RS23505 at 5749.218 kb on - strand, within CA265_RS23505 at 5749.260 kb on - strand, within CA265_RS23505 at 5749.387 kb on + strand, within CA265_RS23505 at 5749.449 kb on + strand, within CA265_RS23505 at 5749.456 kb on - strand, within CA265_RS23505 at 5749.530 kb on + strand, within CA265_RS23505 at 5749.551 kb on + strand, within CA265_RS23505 at 5749.617 kb on + strand at 5749.661 kb on + strand at 5749.671 kb on + strand at 5749.690 kb on + strand at 5749.762 kb on + strand at 5749.795 kb on - strand, within CA265_RS23510 at 5749.798 kb on + strand, within CA265_RS23510 at 5749.818 kb on + strand, within CA265_RS23510 at 5749.933 kb on + strand, within CA265_RS23510
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 5,747,542 + -1.5 5,747,558 + -4.7 5,747,561 + -2.8 5,748,437 + +0.2 5,748,437 + +1.2 5,748,528 + +2.3 5,749,160 + +2.4 5,749,197 + +2.4 5,749,217 + CA265_RS23505 0.13 +0.5 5,749,218 - CA265_RS23505 0.13 +2.6 5,749,260 - CA265_RS23505 0.22 +1.7 5,749,387 + CA265_RS23505 0.47 +2.0 5,749,449 + CA265_RS23505 0.59 +2.1 5,749,456 - CA265_RS23505 0.60 -0.3 5,749,530 + CA265_RS23505 0.75 +2.0 5,749,551 + CA265_RS23505 0.79 +0.9 5,749,617 + +1.2 5,749,661 + +1.6 5,749,671 + +1.6 5,749,690 + +1.9 5,749,762 + +2.4 5,749,795 - CA265_RS23510 0.15 +1.6 5,749,798 + CA265_RS23510 0.15 +1.8 5,749,818 + CA265_RS23510 0.17 +0.8 5,749,933 + CA265_RS23510 0.31 +2.1
Or see this region's nucleotide sequence