Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22210 and CA265_RS22215 are separated by 397 nucleotides CA265_RS22215 and CA265_RS22220 are separated by 144 nucleotides CA265_RS22220 and CA265_RS22225 are separated by 105 nucleotides
CA265_RS22210: CA265_RS22210 - hypothetical protein, at 5,458,499 to 5,459,275
_RS22210
CA265_RS22215: CA265_RS22215 - type VI secretion system needle protein Hcp, at 5,459,673 to 5,460,068
_RS22215
CA265_RS22220: CA265_RS22220 - hypothetical protein, at 5,460,213 to 5,460,608
_RS22220
CA265_RS22225: CA265_RS22225 - hypothetical protein, at 5,460,714 to 5,461,265
_RS22225
Position (kb) 5459
5460
5461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5458.715 kb on + strand, within CA265_RS22210 at 5458.761 kb on - strand, within CA265_RS22210 at 5458.784 kb on - strand, within CA265_RS22210 at 5458.836 kb on - strand, within CA265_RS22210 at 5458.862 kb on + strand, within CA265_RS22210 at 5459.031 kb on + strand, within CA265_RS22210 at 5459.124 kb on + strand, within CA265_RS22210 at 5459.160 kb on + strand, within CA265_RS22210 at 5459.182 kb on + strand, within CA265_RS22210 at 5459.270 kb on - strand at 5459.277 kb on + strand at 5459.309 kb on - strand at 5459.352 kb on + strand at 5459.354 kb on + strand at 5459.358 kb on - strand at 5459.371 kb on + strand at 5459.372 kb on - strand at 5459.431 kb on - strand at 5459.436 kb on - strand at 5459.440 kb on + strand at 5459.477 kb on - strand at 5459.571 kb on - strand at 5459.573 kb on - strand at 5459.573 kb on - strand at 5459.573 kb on - strand at 5459.574 kb on + strand at 5459.616 kb on - strand at 5459.620 kb on - strand at 5460.047 kb on + strand at 5460.084 kb on - strand at 5460.099 kb on - strand at 5460.123 kb on - strand at 5460.123 kb on - strand at 5460.124 kb on + strand at 5460.125 kb on - strand at 5460.125 kb on - strand at 5460.133 kb on + strand at 5460.134 kb on - strand at 5460.134 kb on - strand at 5460.138 kb on + strand at 5460.204 kb on - strand at 5460.210 kb on - strand at 5460.463 kb on + strand, within CA265_RS22220 at 5460.481 kb on - strand, within CA265_RS22220 at 5460.631 kb on - strand at 5460.638 kb on + strand at 5460.639 kb on - strand at 5460.694 kb on - strand at 5460.694 kb on - strand at 5460.724 kb on + strand at 5460.777 kb on + strand, within CA265_RS22225 at 5460.777 kb on + strand, within CA265_RS22225 at 5460.777 kb on + strand, within CA265_RS22225 at 5460.777 kb on + strand, within CA265_RS22225 at 5460.778 kb on - strand, within CA265_RS22225 at 5460.779 kb on + strand, within CA265_RS22225 at 5460.788 kb on - strand, within CA265_RS22225 at 5460.857 kb on + strand, within CA265_RS22225 at 5460.897 kb on - strand, within CA265_RS22225 at 5460.986 kb on + strand, within CA265_RS22225
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 5,458,715 + CA265_RS22210 0.28 +0.3 5,458,761 - CA265_RS22210 0.34 -0.2 5,458,784 - CA265_RS22210 0.37 +0.5 5,458,836 - CA265_RS22210 0.43 +0.2 5,458,862 + CA265_RS22210 0.47 +0.7 5,459,031 + CA265_RS22210 0.68 -1.4 5,459,124 + CA265_RS22210 0.80 -1.6 5,459,160 + CA265_RS22210 0.85 -0.9 5,459,182 + CA265_RS22210 0.88 -1.0 5,459,270 - +0.0 5,459,277 + -0.2 5,459,309 - -0.3 5,459,352 + -0.8 5,459,354 + -0.3 5,459,358 - +1.2 5,459,371 + -0.5 5,459,372 - +0.6 5,459,431 - -0.8 5,459,436 - +0.7 5,459,440 + -0.2 5,459,477 - -0.5 5,459,571 - +0.8 5,459,573 - +0.1 5,459,573 - +0.6 5,459,573 - -0.4 5,459,574 + +0.1 5,459,616 - -2.3 5,459,620 - -0.2 5,460,047 + +0.7 5,460,084 - +1.0 5,460,099 - -0.1 5,460,123 - -0.0 5,460,123 - +0.4 5,460,124 + -0.7 5,460,125 - -0.3 5,460,125 - +1.0 5,460,133 + -1.6 5,460,134 - +0.6 5,460,134 - +0.4 5,460,138 + -0.8 5,460,204 - -0.5 5,460,210 - -0.3 5,460,463 + CA265_RS22220 0.63 +1.4 5,460,481 - CA265_RS22220 0.68 +0.0 5,460,631 - +0.3 5,460,638 + -1.2 5,460,639 - +0.5 5,460,694 - +1.8 5,460,694 - -1.8 5,460,724 + -0.7 5,460,777 + CA265_RS22225 0.11 +0.1 5,460,777 + CA265_RS22225 0.11 -0.2 5,460,777 + CA265_RS22225 0.11 +0.6 5,460,777 + CA265_RS22225 0.11 -1.8 5,460,778 - CA265_RS22225 0.12 +0.4 5,460,779 + CA265_RS22225 0.12 -0.2 5,460,788 - CA265_RS22225 0.13 -1.8 5,460,857 + CA265_RS22225 0.26 -0.8 5,460,897 - CA265_RS22225 0.33 +0.2 5,460,986 + CA265_RS22225 0.49 -0.5
Or see this region's nucleotide sequence