Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21025 and CA265_RS21030 overlap by 1 nucleotides CA265_RS21030 and CA265_RS21035 are separated by 78 nucleotides CA265_RS21035 and CA265_RS21040 overlap by 4 nucleotides
CA265_RS21025: CA265_RS21025 - histidine kinase, at 5,178,878 to 5,180,755
_RS21025
CA265_RS21030: CA265_RS21030 - hypothetical protein, at 5,180,755 to 5,181,408
_RS21030
CA265_RS21035: CA265_RS21035 - 3-oxoacyl-ACP synthase, at 5,181,487 to 5,182,563
_RS21035
CA265_RS21040: CA265_RS21040 - hypothetical protein, at 5,182,560 to 5,184,047
_RS21040
Position (kb) 5181
5182
5183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5180.497 kb on - strand, within CA265_RS21025 at 5180.527 kb on + strand, within CA265_RS21025 at 5180.528 kb on - strand, within CA265_RS21025 at 5180.533 kb on + strand, within CA265_RS21025 at 5180.563 kb on - strand, within CA265_RS21025 at 5180.623 kb on + strand at 5180.710 kb on + strand at 5180.753 kb on + strand at 5180.805 kb on + strand at 5181.017 kb on + strand, within CA265_RS21030 at 5181.026 kb on - strand, within CA265_RS21030 at 5181.126 kb on + strand, within CA265_RS21030 at 5181.128 kb on + strand, within CA265_RS21030 at 5181.128 kb on + strand, within CA265_RS21030 at 5181.129 kb on - strand, within CA265_RS21030 at 5181.189 kb on + strand, within CA265_RS21030 at 5181.255 kb on - strand, within CA265_RS21030 at 5181.255 kb on - strand, within CA265_RS21030 at 5181.301 kb on - strand, within CA265_RS21030 at 5181.309 kb on - strand, within CA265_RS21030 at 5181.322 kb on - strand, within CA265_RS21030 at 5181.351 kb on - strand at 5181.437 kb on + strand at 5181.437 kb on + strand at 5181.438 kb on - strand at 5181.438 kb on - strand at 5181.438 kb on - strand at 5181.483 kb on - strand at 5181.504 kb on + strand at 5181.505 kb on - strand at 5181.530 kb on - strand at 5181.547 kb on - strand at 5181.664 kb on + strand, within CA265_RS21035 at 5181.684 kb on - strand, within CA265_RS21035 at 5181.735 kb on + strand, within CA265_RS21035 at 5181.736 kb on - strand, within CA265_RS21035 at 5181.760 kb on - strand, within CA265_RS21035 at 5181.760 kb on - strand, within CA265_RS21035 at 5181.760 kb on - strand, within CA265_RS21035 at 5181.762 kb on + strand, within CA265_RS21035 at 5181.762 kb on + strand, within CA265_RS21035 at 5181.814 kb on - strand, within CA265_RS21035 at 5181.881 kb on - strand, within CA265_RS21035 at 5181.935 kb on - strand, within CA265_RS21035 at 5181.937 kb on + strand, within CA265_RS21035 at 5181.938 kb on - strand, within CA265_RS21035 at 5181.938 kb on - strand, within CA265_RS21035 at 5181.966 kb on + strand, within CA265_RS21035 at 5181.989 kb on + strand, within CA265_RS21035 at 5182.020 kb on + strand, within CA265_RS21035 at 5182.091 kb on + strand, within CA265_RS21035 at 5182.092 kb on - strand, within CA265_RS21035 at 5182.094 kb on + strand, within CA265_RS21035 at 5182.131 kb on + strand, within CA265_RS21035 at 5182.214 kb on - strand, within CA265_RS21035 at 5182.294 kb on - strand, within CA265_RS21035 at 5182.294 kb on - strand, within CA265_RS21035 at 5182.298 kb on + strand, within CA265_RS21035 at 5182.413 kb on - strand, within CA265_RS21035 at 5182.448 kb on + strand, within CA265_RS21035 at 5182.457 kb on + strand at 5182.520 kb on + strand at 5182.540 kb on - strand at 5182.540 kb on - strand at 5182.548 kb on + strand at 5182.643 kb on + strand at 5182.670 kb on + strand at 5182.743 kb on - strand, within CA265_RS21040 at 5182.804 kb on + strand, within CA265_RS21040 at 5182.805 kb on - strand, within CA265_RS21040 at 5182.805 kb on - strand, within CA265_RS21040 at 5182.838 kb on + strand, within CA265_RS21040 at 5182.855 kb on + strand, within CA265_RS21040 at 5182.855 kb on + strand, within CA265_RS21040 at 5182.856 kb on - strand, within CA265_RS21040 at 5182.882 kb on - strand, within CA265_RS21040 at 5182.900 kb on - strand, within CA265_RS21040 at 5182.996 kb on + strand, within CA265_RS21040 at 5182.996 kb on + strand, within CA265_RS21040 at 5182.996 kb on + strand, within CA265_RS21040 at 5182.996 kb on + strand, within CA265_RS21040 at 5182.997 kb on - strand, within CA265_RS21040 at 5182.997 kb on - strand, within CA265_RS21040 at 5183.000 kb on + strand, within CA265_RS21040 at 5183.000 kb on + strand, within CA265_RS21040 at 5183.001 kb on - strand, within CA265_RS21040 at 5183.086 kb on + strand, within CA265_RS21040 at 5183.087 kb on - strand, within CA265_RS21040 at 5183.196 kb on + strand, within CA265_RS21040 at 5183.197 kb on - strand, within CA265_RS21040 at 5183.215 kb on + strand, within CA265_RS21040 at 5183.277 kb on - strand, within CA265_RS21040 at 5183.287 kb on + strand, within CA265_RS21040 at 5183.287 kb on + strand, within CA265_RS21040 at 5183.287 kb on + strand, within CA265_RS21040 at 5183.288 kb on - strand, within CA265_RS21040 at 5183.338 kb on + strand, within CA265_RS21040 at 5183.338 kb on + strand, within CA265_RS21040 at 5183.338 kb on + strand, within CA265_RS21040 at 5183.339 kb on - strand, within CA265_RS21040 at 5183.339 kb on - strand, within CA265_RS21040 at 5183.370 kb on - strand, within CA265_RS21040 at 5183.370 kb on - strand, within CA265_RS21040 at 5183.388 kb on + strand, within CA265_RS21040 at 5183.392 kb on + strand, within CA265_RS21040 at 5183.392 kb on + strand, within CA265_RS21040 at 5183.392 kb on + strand, within CA265_RS21040 at 5183.472 kb on - strand, within CA265_RS21040 at 5183.475 kb on + strand, within CA265_RS21040 at 5183.514 kb on + strand, within CA265_RS21040 at 5183.515 kb on - strand, within CA265_RS21040 at 5183.526 kb on + strand, within CA265_RS21040 at 5183.561 kb on + strand, within CA265_RS21040
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 5,180,497 - CA265_RS21025 0.86 +0.4 5,180,527 + CA265_RS21025 0.88 -0.3 5,180,528 - CA265_RS21025 0.88 +0.1 5,180,533 + CA265_RS21025 0.88 +0.9 5,180,563 - CA265_RS21025 0.90 +1.6 5,180,623 + -0.1 5,180,710 + -0.2 5,180,753 + -0.0 5,180,805 + -0.3 5,181,017 + CA265_RS21030 0.40 -0.1 5,181,026 - CA265_RS21030 0.41 -0.5 5,181,126 + CA265_RS21030 0.57 +0.3 5,181,128 + CA265_RS21030 0.57 +1.2 5,181,128 + CA265_RS21030 0.57 +1.2 5,181,129 - CA265_RS21030 0.57 -0.3 5,181,189 + CA265_RS21030 0.66 +0.6 5,181,255 - CA265_RS21030 0.76 -0.9 5,181,255 - CA265_RS21030 0.76 +0.2 5,181,301 - CA265_RS21030 0.83 +0.2 5,181,309 - CA265_RS21030 0.85 -0.3 5,181,322 - CA265_RS21030 0.87 +0.5 5,181,351 - +0.5 5,181,437 + -0.8 5,181,437 + +0.6 5,181,438 - -1.7 5,181,438 - -1.1 5,181,438 - -0.1 5,181,483 - +0.2 5,181,504 + -0.0 5,181,505 - +0.8 5,181,530 - +0.5 5,181,547 - -0.5 5,181,664 + CA265_RS21035 0.16 -0.3 5,181,684 - CA265_RS21035 0.18 +0.1 5,181,735 + CA265_RS21035 0.23 -2.9 5,181,736 - CA265_RS21035 0.23 +1.4 5,181,760 - CA265_RS21035 0.25 +0.0 5,181,760 - CA265_RS21035 0.25 -0.8 5,181,760 - CA265_RS21035 0.25 -1.6 5,181,762 + CA265_RS21035 0.26 -0.8 5,181,762 + CA265_RS21035 0.26 -0.4 5,181,814 - CA265_RS21035 0.30 +0.8 5,181,881 - CA265_RS21035 0.37 -0.5 5,181,935 - CA265_RS21035 0.42 -1.4 5,181,937 + CA265_RS21035 0.42 -0.5 5,181,938 - CA265_RS21035 0.42 -0.1 5,181,938 - CA265_RS21035 0.42 +0.4 5,181,966 + CA265_RS21035 0.44 +0.2 5,181,989 + CA265_RS21035 0.47 -1.1 5,182,020 + CA265_RS21035 0.49 -0.5 5,182,091 + CA265_RS21035 0.56 -1.8 5,182,092 - CA265_RS21035 0.56 -0.1 5,182,094 + CA265_RS21035 0.56 -1.1 5,182,131 + CA265_RS21035 0.60 -1.5 5,182,214 - CA265_RS21035 0.68 +0.2 5,182,294 - CA265_RS21035 0.75 +0.3 5,182,294 - CA265_RS21035 0.75 +0.6 5,182,298 + CA265_RS21035 0.75 -0.3 5,182,413 - CA265_RS21035 0.86 +0.4 5,182,448 + CA265_RS21035 0.89 -0.5 5,182,457 + +0.3 5,182,520 + -2.0 5,182,540 - -0.5 5,182,540 - -0.6 5,182,548 + -0.4 5,182,643 + -0.5 5,182,670 + -0.4 5,182,743 - CA265_RS21040 0.12 -0.1 5,182,804 + CA265_RS21040 0.16 -0.8 5,182,805 - CA265_RS21040 0.16 +0.9 5,182,805 - CA265_RS21040 0.16 -0.2 5,182,838 + CA265_RS21040 0.19 +1.6 5,182,855 + CA265_RS21040 0.20 -0.2 5,182,855 + CA265_RS21040 0.20 -0.1 5,182,856 - CA265_RS21040 0.20 +0.3 5,182,882 - CA265_RS21040 0.22 +0.3 5,182,900 - CA265_RS21040 0.23 +0.1 5,182,996 + CA265_RS21040 0.29 +1.2 5,182,996 + CA265_RS21040 0.29 -2.8 5,182,996 + CA265_RS21040 0.29 -0.7 5,182,996 + CA265_RS21040 0.29 -2.0 5,182,997 - CA265_RS21040 0.29 +0.3 5,182,997 - CA265_RS21040 0.29 -2.2 5,183,000 + CA265_RS21040 0.30 +0.3 5,183,000 + CA265_RS21040 0.30 -0.6 5,183,001 - CA265_RS21040 0.30 -0.7 5,183,086 + CA265_RS21040 0.35 -0.3 5,183,087 - CA265_RS21040 0.35 -0.3 5,183,196 + CA265_RS21040 0.43 -0.4 5,183,197 - CA265_RS21040 0.43 +0.5 5,183,215 + CA265_RS21040 0.44 -0.2 5,183,277 - CA265_RS21040 0.48 +1.2 5,183,287 + CA265_RS21040 0.49 -1.3 5,183,287 + CA265_RS21040 0.49 +0.6 5,183,287 + CA265_RS21040 0.49 -0.3 5,183,288 - CA265_RS21040 0.49 -1.5 5,183,338 + CA265_RS21040 0.52 -0.6 5,183,338 + CA265_RS21040 0.52 -0.7 5,183,338 + CA265_RS21040 0.52 -0.3 5,183,339 - CA265_RS21040 0.52 +2.2 5,183,339 - CA265_RS21040 0.52 -0.3 5,183,370 - CA265_RS21040 0.54 -0.1 5,183,370 - CA265_RS21040 0.54 -0.3 5,183,388 + CA265_RS21040 0.56 +1.0 5,183,392 + CA265_RS21040 0.56 -1.2 5,183,392 + CA265_RS21040 0.56 -1.2 5,183,392 + CA265_RS21040 0.56 -0.7 5,183,472 - CA265_RS21040 0.61 +0.6 5,183,475 + CA265_RS21040 0.61 +0.0 5,183,514 + CA265_RS21040 0.64 -0.8 5,183,515 - CA265_RS21040 0.64 -0.8 5,183,526 + CA265_RS21040 0.65 -1.0 5,183,561 + CA265_RS21040 0.67 -0.1
Or see this region's nucleotide sequence