Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19020

Experiment: R2A with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS19010 and CA265_RS19015 are separated by 18 nucleotidesCA265_RS19015 and CA265_RS19020 are separated by 34 nucleotidesCA265_RS19020 and CA265_RS19025 are separated by 47 nucleotides CA265_RS19010: CA265_RS19010 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 4,731,083 to 4,732,501 _RS19010 CA265_RS19015: CA265_RS19015 - twin-arginine translocase TatA/TatE family subunit, at 4,732,520 to 4,732,696 _RS19015 CA265_RS19020: CA265_RS19020 - twin-arginine translocase TatA/TatE family subunit, at 4,732,731 to 4,733,090 _RS19020 CA265_RS19025: CA265_RS19025 - peptidase M23, at 4,733,138 to 4,734,433 _RS19025 Position (kb) 4732 4733 4734Strain fitness (log2 ratio) -2 -1 0 1at 4733.201 kb on + strandat 4733.264 kb on + strandat 4733.265 kb on - strandat 4733.296 kb on - strand, within CA265_RS19025at 4733.296 kb on - strand, within CA265_RS19025at 4733.349 kb on - strand, within CA265_RS19025at 4733.369 kb on - strand, within CA265_RS19025at 4733.411 kb on - strand, within CA265_RS19025at 4733.411 kb on - strand, within CA265_RS19025at 4733.453 kb on - strand, within CA265_RS19025at 4733.501 kb on + strand, within CA265_RS19025at 4733.502 kb on - strand, within CA265_RS19025at 4733.561 kb on - strand, within CA265_RS19025at 4733.600 kb on - strand, within CA265_RS19025at 4733.612 kb on - strand, within CA265_RS19025at 4733.612 kb on - strand, within CA265_RS19025at 4733.616 kb on - strand, within CA265_RS19025at 4733.779 kb on + strand, within CA265_RS19025at 4733.846 kb on - strand, within CA265_RS19025at 4733.851 kb on + strand, within CA265_RS19025at 4733.906 kb on - strand, within CA265_RS19025at 4733.914 kb on + strand, within CA265_RS19025at 4733.953 kb on + strand, within CA265_RS19025at 4733.964 kb on + strand, within CA265_RS19025at 4733.992 kb on + strand, within CA265_RS19025at 4734.003 kb on - strand, within CA265_RS19025

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM
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4,733,201 + +0.3
4,733,264 + +1.0
4,733,265 - -2.1
4,733,296 - CA265_RS19025 0.12 -0.6
4,733,296 - CA265_RS19025 0.12 -2.2
4,733,349 - CA265_RS19025 0.16 -1.1
4,733,369 - CA265_RS19025 0.18 +0.2
4,733,411 - CA265_RS19025 0.21 -2.1
4,733,411 - CA265_RS19025 0.21 +0.4
4,733,453 - CA265_RS19025 0.24 -1.7
4,733,501 + CA265_RS19025 0.28 +0.1
4,733,502 - CA265_RS19025 0.28 -1.1
4,733,561 - CA265_RS19025 0.33 -2.4
4,733,600 - CA265_RS19025 0.36 -0.3
4,733,612 - CA265_RS19025 0.37 -0.4
4,733,612 - CA265_RS19025 0.37 -0.3
4,733,616 - CA265_RS19025 0.37 -1.4
4,733,779 + CA265_RS19025 0.49 -0.1
4,733,846 - CA265_RS19025 0.55 +1.5
4,733,851 + CA265_RS19025 0.55 -1.0
4,733,906 - CA265_RS19025 0.59 -1.0
4,733,914 + CA265_RS19025 0.60 -1.0
4,733,953 + CA265_RS19025 0.63 -0.2
4,733,964 + CA265_RS19025 0.64 -2.4
4,733,992 + CA265_RS19025 0.66 -0.7
4,734,003 - CA265_RS19025 0.67 -2.4

Or see this region's nucleotide sequence