Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17855

Experiment: R2A with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS17850 and CA265_RS17855 are separated by 255 nucleotides CA265_RS17850: CA265_RS17850 - cytochrome C, at 4,464,426 to 4,465,718 _RS17850 CA265_RS17855: CA265_RS17855 - deoxyhypusine synthase, at 4,465,974 to 4,466,954 _RS17855 Position (kb) 4465 4466 4467Strain fitness (log2 ratio) -1 0 1at 4465.814 kb on - strandat 4465.814 kb on - strandat 4465.837 kb on - strandat 4465.924 kb on - strandat 4465.924 kb on - strandat 4465.942 kb on - strandat 4466.987 kb on - strandat 4467.010 kb on + strandat 4467.077 kb on + strandat 4467.159 kb on - strandat 4467.165 kb on + strandat 4467.166 kb on - strandat 4467.269 kb on + strandat 4467.320 kb on + strandat 4467.321 kb on - strandat 4467.334 kb on + strandat 4467.335 kb on - strandat 4467.470 kb on + strandat 4467.474 kb on - strandat 4467.486 kb on + strandat 4467.487 kb on - strandat 4467.499 kb on + strandat 4467.566 kb on - strandat 4467.584 kb on - strandat 4467.656 kb on + strandat 4467.667 kb on + strandat 4467.746 kb on - strandat 4467.763 kb on + strandat 4467.766 kb on + strandat 4467.912 kb on - strandat 4467.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM
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4,465,814 - -1.7
4,465,814 - +0.5
4,465,837 - -0.0
4,465,924 - -0.4
4,465,924 - -0.8
4,465,942 - +0.9
4,466,987 - +0.3
4,467,010 + +1.3
4,467,077 + +0.6
4,467,159 - -0.3
4,467,165 + +0.3
4,467,166 - +0.1
4,467,269 + -0.2
4,467,320 + +0.5
4,467,321 - -0.4
4,467,334 + -0.5
4,467,335 - -1.4
4,467,470 + -0.2
4,467,474 - -0.0
4,467,486 + +0.1
4,467,487 - -0.6
4,467,499 + +0.1
4,467,566 - +0.6
4,467,584 - -0.2
4,467,656 + +0.5
4,467,667 + -0.1
4,467,746 - +0.2
4,467,763 + +0.9
4,467,766 + +0.2
4,467,912 - +0.5
4,467,937 - +0.1

Or see this region's nucleotide sequence