Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16860

Experiment: R2A with Nickel (II) chloride 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS16850 and CA265_RS16855 are separated by 18 nucleotidesCA265_RS16855 and CA265_RS16860 are separated by 175 nucleotidesCA265_RS16860 and CA265_RS16865 overlap by 1 nucleotidesCA265_RS16865 and CA265_RS16870 overlap by 4 nucleotidesCA265_RS16870 and CA265_RS16875 are separated by 1 nucleotides CA265_RS16850: CA265_RS16850 - 50S ribosomal protein L6, at 4,220,564 to 4,221,121 _RS16850 CA265_RS16855: CA265_RS16855 - 30S ribosomal protein S8, at 4,221,140 to 4,221,538 _RS16855 CA265_RS16860: CA265_RS16860 - 30S ribosomal protein S14, at 4,221,714 to 4,221,983 _RS16860 CA265_RS16865: CA265_RS16865 - 50S ribosomal protein L5, at 4,221,983 to 4,222,549 _RS16865 CA265_RS16870: CA265_RS16870 - 50S ribosomal protein L24, at 4,222,546 to 4,222,887 _RS16870 CA265_RS16875: CA265_RS16875 - 50S ribosomal protein L14, at 4,222,889 to 4,223,257 _RS16875 Position (kb) 4221 4222Strain fitness (log2 ratio) -1 0 1at 4221.628 kb on - strandat 4221.643 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM
remove
4,221,628 - -1.2
4,221,643 - -1.4

Or see this region's nucleotide sequence