Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15460

Experiment: R2A with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15455 and CA265_RS15460 are separated by 151 nucleotidesCA265_RS15460 and CA265_RS15465 are separated by 187 nucleotides CA265_RS15455: CA265_RS15455 - agmatine deiminase, at 3,887,034 to 3,888,110 _RS15455 CA265_RS15460: CA265_RS15460 - four helix bundle protein, at 3,888,262 to 3,888,615 _RS15460 CA265_RS15465: CA265_RS15465 - acyltransferase, at 3,888,803 to 3,889,678 _RS15465 Position (kb) 3888 3889Strain fitness (log2 ratio) -1 0 1 2at 3888.216 kb on - strandat 3888.216 kb on - strandat 3888.288 kb on - strandat 3888.649 kb on - strandat 3888.662 kb on - strandat 3888.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM
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3,888,216 - +2.3
3,888,216 - -0.5
3,888,288 - +1.7
3,888,649 - -0.3
3,888,662 - +0.7
3,888,662 - -0.5

Or see this region's nucleotide sequence