Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06205

Experiment: R2A with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS06200 and CA265_RS06205 are separated by 234 nucleotidesCA265_RS06205 and CA265_RS06210 are separated by 450 nucleotides CA265_RS06200: CA265_RS06200 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 1,528,996 to 1,530,318 _RS06200 CA265_RS06205: CA265_RS06205 - hypothetical protein, at 1,530,553 to 1,531,551 _RS06205 CA265_RS06210: CA265_RS06210 - diacylglyceryl transferase, at 1,532,002 to 1,533,150 _RS06210 Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -1 0 1at 1529.660 kb on + strand, within CA265_RS06200at 1529.683 kb on - strand, within CA265_RS06200at 1529.865 kb on - strand, within CA265_RS06200at 1529.888 kb on + strand, within CA265_RS06200at 1529.895 kb on - strand, within CA265_RS06200at 1529.941 kb on + strand, within CA265_RS06200at 1529.942 kb on - strand, within CA265_RS06200at 1529.942 kb on - strand, within CA265_RS06200at 1529.981 kb on + strand, within CA265_RS06200at 1529.985 kb on + strand, within CA265_RS06200at 1530.006 kb on - strand, within CA265_RS06200at 1530.064 kb on - strand, within CA265_RS06200at 1530.087 kb on + strand, within CA265_RS06200at 1530.211 kb on + strandat 1530.285 kb on - strandat 1530.357 kb on - strandat 1530.407 kb on + strandat 1530.422 kb on - strandat 1530.445 kb on + strandat 1530.446 kb on - strandat 1530.478 kb on - strandat 1530.478 kb on - strandat 1530.490 kb on - strandat 1531.879 kb on - strandat 1531.881 kb on + strandat 1531.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM
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1,529,660 + CA265_RS06200 0.50 -0.4
1,529,683 - CA265_RS06200 0.52 -0.5
1,529,865 - CA265_RS06200 0.66 -0.4
1,529,888 + CA265_RS06200 0.67 +0.9
1,529,895 - CA265_RS06200 0.68 -0.7
1,529,941 + CA265_RS06200 0.71 -0.6
1,529,942 - CA265_RS06200 0.72 -0.2
1,529,942 - CA265_RS06200 0.72 -0.9
1,529,981 + CA265_RS06200 0.74 -0.6
1,529,985 + CA265_RS06200 0.75 -0.6
1,530,006 - CA265_RS06200 0.76 -0.6
1,530,064 - CA265_RS06200 0.81 -0.1
1,530,087 + CA265_RS06200 0.82 +1.0
1,530,211 + -0.6
1,530,285 - +0.7
1,530,357 - +1.0
1,530,407 + +0.9
1,530,422 - +0.4
1,530,445 + +0.0
1,530,446 - -0.6
1,530,478 - -0.2
1,530,478 - +0.1
1,530,490 - +0.2
1,531,879 - -0.2
1,531,881 + -0.3
1,531,930 + +0.1

Or see this region's nucleotide sequence