Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03680 and CA265_RS03685 are separated by 2 nucleotides CA265_RS03685 and CA265_RS03690 are separated by 24 nucleotides CA265_RS03690 and CA265_RS03695 are separated by 58 nucleotides CA265_RS03695 and CA265_RS03700 are separated by 40 nucleotides
CA265_RS03680: CA265_RS03680 - RNA 2'-phosphotransferase, at 876,685 to 877,227
_RS03680
CA265_RS03685: CA265_RS03685 - serine/threonine protein phosphatase, at 877,230 to 877,961
_RS03685
CA265_RS03690: CA265_RS03690 - nicotinate phosphoribosyltransferase, at 877,986 to 879,443
_RS03690
CA265_RS03695: CA265_RS03695 - hypothetical protein, at 879,502 to 879,906
_RS03695
CA265_RS03700: CA265_RS03700 - hypothetical protein, at 879,947 to 880,477
_RS03700
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 877.015 kb on - strand, within CA265_RS03680 at 877.086 kb on + strand, within CA265_RS03680 at 877.099 kb on - strand, within CA265_RS03680 at 877.116 kb on + strand, within CA265_RS03680 at 877.118 kb on + strand, within CA265_RS03680 at 877.216 kb on - strand at 877.218 kb on - strand at 877.243 kb on + strand at 877.247 kb on - strand at 877.250 kb on - strand at 877.256 kb on + strand at 877.257 kb on - strand at 877.257 kb on - strand at 877.306 kb on + strand, within CA265_RS03685 at 877.341 kb on + strand, within CA265_RS03685 at 877.373 kb on - strand, within CA265_RS03685 at 877.467 kb on - strand, within CA265_RS03685 at 877.471 kb on + strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.508 kb on + strand, within CA265_RS03685 at 877.518 kb on + strand, within CA265_RS03685 at 877.656 kb on + strand, within CA265_RS03685 at 877.657 kb on - strand, within CA265_RS03685 at 877.669 kb on - strand, within CA265_RS03685 at 877.736 kb on - strand, within CA265_RS03685 at 877.801 kb on - strand, within CA265_RS03685 at 877.801 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.829 kb on + strand, within CA265_RS03685 at 877.830 kb on - strand, within CA265_RS03685 at 877.873 kb on + strand, within CA265_RS03685 at 877.922 kb on - strand at 877.974 kb on + strand at 877.980 kb on - strand at 877.999 kb on + strand at 877.999 kb on + strand at 878.020 kb on + strand at 878.021 kb on - strand at 878.048 kb on + strand at 878.101 kb on + strand at 878.150 kb on + strand, within CA265_RS03690 at 878.151 kb on - strand, within CA265_RS03690 at 878.162 kb on + strand, within CA265_RS03690 at 878.294 kb on + strand, within CA265_RS03690 at 878.295 kb on - strand, within CA265_RS03690 at 878.304 kb on - strand, within CA265_RS03690 at 878.351 kb on + strand, within CA265_RS03690 at 878.358 kb on + strand, within CA265_RS03690 at 878.358 kb on + strand, within CA265_RS03690 at 878.358 kb on + strand, within CA265_RS03690 at 878.359 kb on - strand, within CA265_RS03690 at 878.359 kb on - strand, within CA265_RS03690 at 878.391 kb on - strand, within CA265_RS03690 at 878.407 kb on + strand, within CA265_RS03690 at 878.408 kb on - strand, within CA265_RS03690 at 878.481 kb on + strand, within CA265_RS03690 at 878.481 kb on + strand, within CA265_RS03690 at 878.482 kb on - strand, within CA265_RS03690 at 878.482 kb on - strand, within CA265_RS03690 at 878.541 kb on - strand, within CA265_RS03690 at 878.646 kb on + strand, within CA265_RS03690 at 878.647 kb on - strand, within CA265_RS03690 at 878.650 kb on - strand, within CA265_RS03690 at 878.789 kb on - strand, within CA265_RS03690 at 878.824 kb on + strand, within CA265_RS03690 at 878.825 kb on - strand, within CA265_RS03690 at 878.858 kb on + strand, within CA265_RS03690 at 878.859 kb on - strand, within CA265_RS03690 at 878.859 kb on - strand, within CA265_RS03690 at 878.966 kb on - strand, within CA265_RS03690 at 878.966 kb on - strand, within CA265_RS03690 at 878.987 kb on - strand, within CA265_RS03690 at 879.002 kb on + strand, within CA265_RS03690 at 879.003 kb on - strand, within CA265_RS03690 at 879.056 kb on + strand, within CA265_RS03690 at 879.057 kb on - strand, within CA265_RS03690 at 879.060 kb on - strand, within CA265_RS03690 at 879.060 kb on - strand, within CA265_RS03690 at 879.119 kb on + strand, within CA265_RS03690 at 879.120 kb on - strand, within CA265_RS03690 at 879.150 kb on - strand, within CA265_RS03690 at 879.164 kb on + strand, within CA265_RS03690 at 879.201 kb on + strand, within CA265_RS03690 at 879.201 kb on + strand, within CA265_RS03690 at 879.202 kb on - strand, within CA265_RS03690 at 879.202 kb on - strand, within CA265_RS03690 at 879.202 kb on - strand, within CA265_RS03690 at 879.211 kb on + strand, within CA265_RS03690 at 879.315 kb on + strand at 879.391 kb on + strand at 879.391 kb on + strand at 879.403 kb on - strand at 879.485 kb on + strand at 879.498 kb on + strand at 879.543 kb on - strand, within CA265_RS03695 at 879.562 kb on - strand, within CA265_RS03695 at 879.563 kb on + strand, within CA265_RS03695 at 879.585 kb on + strand, within CA265_RS03695 at 879.586 kb on - strand, within CA265_RS03695 at 879.586 kb on - strand, within CA265_RS03695 at 879.618 kb on + strand, within CA265_RS03695 at 879.697 kb on + strand, within CA265_RS03695 at 879.697 kb on + strand, within CA265_RS03695 at 879.697 kb on + strand, within CA265_RS03695 at 879.698 kb on - strand, within CA265_RS03695 at 879.720 kb on + strand, within CA265_RS03695 at 879.835 kb on - strand, within CA265_RS03695 at 879.855 kb on + strand, within CA265_RS03695 at 879.855 kb on + strand, within CA265_RS03695 at 879.856 kb on - strand, within CA265_RS03695 at 879.978 kb on + strand at 879.994 kb on + strand at 880.034 kb on + strand, within CA265_RS03700 at 880.035 kb on - strand, within CA265_RS03700 at 880.036 kb on + strand, within CA265_RS03700 at 880.036 kb on + strand, within CA265_RS03700 at 880.038 kb on + strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.093 kb on + strand, within CA265_RS03700 at 880.127 kb on + strand, within CA265_RS03700 at 880.142 kb on - strand, within CA265_RS03700 at 880.183 kb on + strand, within CA265_RS03700 at 880.188 kb on + strand, within CA265_RS03700 at 880.188 kb on + strand, within CA265_RS03700 at 880.195 kb on + strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.206 kb on - strand, within CA265_RS03700 at 880.208 kb on - strand, within CA265_RS03700 at 880.227 kb on + strand, within CA265_RS03700 at 880.228 kb on - strand, within CA265_RS03700 at 880.298 kb on + strand, within CA265_RS03700 at 880.418 kb on + strand, within CA265_RS03700 at 880.419 kb on - strand, within CA265_RS03700 at 880.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 877,015 - CA265_RS03680 0.61 -0.1 877,086 + CA265_RS03680 0.74 -0.7 877,099 - CA265_RS03680 0.76 -0.7 877,116 + CA265_RS03680 0.79 -0.3 877,118 + CA265_RS03680 0.80 +0.1 877,216 - +0.7 877,218 - -0.7 877,243 + +0.2 877,247 - +0.6 877,250 - +0.6 877,256 + -0.3 877,257 - -0.7 877,257 - -0.0 877,306 + CA265_RS03685 0.10 -1.3 877,341 + CA265_RS03685 0.15 -0.9 877,373 - CA265_RS03685 0.20 +0.2 877,467 - CA265_RS03685 0.32 +2.6 877,471 + CA265_RS03685 0.33 -1.0 877,472 - CA265_RS03685 0.33 -0.1 877,472 - CA265_RS03685 0.33 -0.1 877,472 - CA265_RS03685 0.33 +0.1 877,508 + CA265_RS03685 0.38 -0.7 877,518 + CA265_RS03685 0.39 -3.5 877,656 + CA265_RS03685 0.58 -0.5 877,657 - CA265_RS03685 0.58 -0.1 877,669 - CA265_RS03685 0.60 -0.0 877,736 - CA265_RS03685 0.69 -0.4 877,801 - CA265_RS03685 0.78 -0.0 877,801 - CA265_RS03685 0.78 -0.5 877,803 - CA265_RS03685 0.78 -0.5 877,803 - CA265_RS03685 0.78 -0.5 877,803 - CA265_RS03685 0.78 +0.4 877,829 + CA265_RS03685 0.82 -0.4 877,830 - CA265_RS03685 0.82 -3.0 877,873 + CA265_RS03685 0.88 +0.2 877,922 - -0.8 877,974 + -0.4 877,980 - +0.2 877,999 + -0.5 877,999 + +0.6 878,020 + -0.7 878,021 - +0.6 878,048 + -1.0 878,101 + +0.2 878,150 + CA265_RS03690 0.11 -0.3 878,151 - CA265_RS03690 0.11 +1.0 878,162 + CA265_RS03690 0.12 -0.3 878,294 + CA265_RS03690 0.21 +0.2 878,295 - CA265_RS03690 0.21 +0.7 878,304 - CA265_RS03690 0.22 +0.3 878,351 + CA265_RS03690 0.25 +0.2 878,358 + CA265_RS03690 0.26 -0.5 878,358 + CA265_RS03690 0.26 -0.4 878,358 + CA265_RS03690 0.26 -1.2 878,359 - CA265_RS03690 0.26 +0.5 878,359 - CA265_RS03690 0.26 +0.1 878,391 - CA265_RS03690 0.28 -0.5 878,407 + CA265_RS03690 0.29 -1.2 878,408 - CA265_RS03690 0.29 -1.0 878,481 + CA265_RS03690 0.34 -0.7 878,481 + CA265_RS03690 0.34 +0.4 878,482 - CA265_RS03690 0.34 -0.5 878,482 - CA265_RS03690 0.34 -1.7 878,541 - CA265_RS03690 0.38 +2.0 878,646 + CA265_RS03690 0.45 +0.0 878,647 - CA265_RS03690 0.45 +0.1 878,650 - CA265_RS03690 0.46 +0.2 878,789 - CA265_RS03690 0.55 +0.1 878,824 + CA265_RS03690 0.57 +0.1 878,825 - CA265_RS03690 0.58 -1.1 878,858 + CA265_RS03690 0.60 -0.3 878,859 - CA265_RS03690 0.60 +0.8 878,859 - CA265_RS03690 0.60 -0.1 878,966 - CA265_RS03690 0.67 -0.9 878,966 - CA265_RS03690 0.67 +1.5 878,987 - CA265_RS03690 0.69 -0.4 879,002 + CA265_RS03690 0.70 -1.4 879,003 - CA265_RS03690 0.70 +0.1 879,056 + CA265_RS03690 0.73 +0.2 879,057 - CA265_RS03690 0.73 -0.8 879,060 - CA265_RS03690 0.74 +0.9 879,060 - CA265_RS03690 0.74 -0.1 879,119 + CA265_RS03690 0.78 -0.4 879,120 - CA265_RS03690 0.78 -0.1 879,150 - CA265_RS03690 0.80 +0.4 879,164 + CA265_RS03690 0.81 -0.9 879,201 + CA265_RS03690 0.83 -0.3 879,201 + CA265_RS03690 0.83 +0.5 879,202 - CA265_RS03690 0.83 +0.6 879,202 - CA265_RS03690 0.83 +1.3 879,202 - CA265_RS03690 0.83 -0.4 879,211 + CA265_RS03690 0.84 +0.5 879,315 + +1.1 879,391 + -1.2 879,391 + +0.2 879,403 - -0.4 879,485 + -0.0 879,498 + -0.2 879,543 - CA265_RS03695 0.10 +0.9 879,562 - CA265_RS03695 0.15 +0.3 879,563 + CA265_RS03695 0.15 +0.5 879,585 + CA265_RS03695 0.20 +1.6 879,586 - CA265_RS03695 0.21 +0.5 879,586 - CA265_RS03695 0.21 +0.3 879,618 + CA265_RS03695 0.29 +2.4 879,697 + CA265_RS03695 0.48 -0.4 879,697 + CA265_RS03695 0.48 -0.2 879,697 + CA265_RS03695 0.48 -0.9 879,698 - CA265_RS03695 0.48 -0.0 879,720 + CA265_RS03695 0.54 -0.1 879,835 - CA265_RS03695 0.82 +0.5 879,855 + CA265_RS03695 0.87 +0.5 879,855 + CA265_RS03695 0.87 +0.3 879,856 - CA265_RS03695 0.87 +0.6 879,978 + -0.8 879,994 + +0.9 880,034 + CA265_RS03700 0.16 -0.5 880,035 - CA265_RS03700 0.17 +0.6 880,036 + CA265_RS03700 0.17 -0.2 880,036 + CA265_RS03700 0.17 +0.2 880,038 + CA265_RS03700 0.17 -0.3 880,039 - CA265_RS03700 0.17 +0.0 880,039 - CA265_RS03700 0.17 -0.3 880,039 - CA265_RS03700 0.17 +0.1 880,093 + CA265_RS03700 0.27 +0.4 880,127 + CA265_RS03700 0.34 +0.1 880,142 - CA265_RS03700 0.37 +1.3 880,183 + CA265_RS03700 0.44 +0.7 880,188 + CA265_RS03700 0.45 -0.8 880,188 + CA265_RS03700 0.45 -0.1 880,195 + CA265_RS03700 0.47 -1.8 880,196 - CA265_RS03700 0.47 +0.4 880,196 - CA265_RS03700 0.47 +0.6 880,196 - CA265_RS03700 0.47 -0.1 880,206 - CA265_RS03700 0.49 +0.3 880,208 - CA265_RS03700 0.49 -0.4 880,227 + CA265_RS03700 0.53 +0.2 880,228 - CA265_RS03700 0.53 +0.2 880,298 + CA265_RS03700 0.66 -0.5 880,418 + CA265_RS03700 0.89 +0.6 880,419 - CA265_RS03700 0.89 +0.6 880,441 - +0.4
Or see this region's nucleotide sequence