Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01125 and CA265_RS01130 are separated by 21 nucleotides CA265_RS01130 and CA265_RS01135 are separated by 118 nucleotides
CA265_RS01125: CA265_RS01125 - gluconate permease, at 285,179 to 286,468
_RS01125
CA265_RS01130: CA265_RS01130 - hypothetical protein, at 286,490 to 286,672
_RS01130
CA265_RS01135: CA265_RS01135 - ABC transporter permease, at 286,791 to 289,325
_RS01135
Position (kb) 286
287 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.539 kb on - strand, within CA265_RS01125 at 285.656 kb on + strand, within CA265_RS01125 at 285.657 kb on - strand, within CA265_RS01125 at 285.713 kb on - strand, within CA265_RS01125 at 285.724 kb on + strand, within CA265_RS01125 at 285.756 kb on - strand, within CA265_RS01125 at 285.756 kb on - strand, within CA265_RS01125 at 285.919 kb on + strand, within CA265_RS01125 at 285.929 kb on + strand, within CA265_RS01125 at 285.930 kb on - strand, within CA265_RS01125 at 285.955 kb on + strand, within CA265_RS01125 at 285.964 kb on - strand, within CA265_RS01125 at 286.025 kb on + strand, within CA265_RS01125 at 286.060 kb on - strand, within CA265_RS01125 at 286.131 kb on + strand, within CA265_RS01125 at 286.132 kb on - strand, within CA265_RS01125 at 286.154 kb on + strand, within CA265_RS01125 at 286.154 kb on + strand, within CA265_RS01125 at 286.155 kb on - strand, within CA265_RS01125 at 286.342 kb on + strand at 286.460 kb on + strand at 286.461 kb on - strand at 286.481 kb on + strand at 286.492 kb on - strand at 286.505 kb on - strand at 286.686 kb on + strand at 286.688 kb on + strand at 286.746 kb on - strand at 286.792 kb on + strand at 286.793 kb on - strand at 286.849 kb on - strand at 286.852 kb on - strand at 286.859 kb on + strand at 286.863 kb on + strand at 286.907 kb on + strand at 286.908 kb on - strand at 286.948 kb on - strand at 287.015 kb on - strand at 287.118 kb on + strand, within CA265_RS01135 at 287.118 kb on + strand, within CA265_RS01135 at 287.148 kb on - strand, within CA265_RS01135 at 287.159 kb on + strand, within CA265_RS01135 at 287.220 kb on + strand, within CA265_RS01135 at 287.307 kb on + strand, within CA265_RS01135 at 287.310 kb on + strand, within CA265_RS01135 at 287.310 kb on + strand, within CA265_RS01135 at 287.311 kb on - strand, within CA265_RS01135 at 287.388 kb on + strand, within CA265_RS01135 at 287.451 kb on - strand, within CA265_RS01135 at 287.501 kb on + strand, within CA265_RS01135 at 287.573 kb on + strand, within CA265_RS01135 at 287.573 kb on + strand, within CA265_RS01135 at 287.581 kb on + strand, within CA265_RS01135 at 287.582 kb on - strand, within CA265_RS01135 at 287.648 kb on + strand, within CA265_RS01135
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 285,539 - CA265_RS01125 0.28 -0.1 285,656 + CA265_RS01125 0.37 -0.2 285,657 - CA265_RS01125 0.37 -0.3 285,713 - CA265_RS01125 0.41 -0.5 285,724 + CA265_RS01125 0.42 +1.8 285,756 - CA265_RS01125 0.45 -0.1 285,756 - CA265_RS01125 0.45 -1.2 285,919 + CA265_RS01125 0.57 -0.8 285,929 + CA265_RS01125 0.58 +1.6 285,930 - CA265_RS01125 0.58 -0.0 285,955 + CA265_RS01125 0.60 -0.1 285,964 - CA265_RS01125 0.61 +0.1 286,025 + CA265_RS01125 0.66 -0.6 286,060 - CA265_RS01125 0.68 +1.8 286,131 + CA265_RS01125 0.74 +0.6 286,132 - CA265_RS01125 0.74 -0.4 286,154 + CA265_RS01125 0.76 +0.2 286,154 + CA265_RS01125 0.76 +1.4 286,155 - CA265_RS01125 0.76 +0.1 286,342 + +0.3 286,460 + -0.6 286,461 - +0.5 286,481 + +0.4 286,492 - -2.7 286,505 - +0.2 286,686 + -0.6 286,688 + +1.8 286,746 - +0.7 286,792 + -0.6 286,793 - +0.3 286,849 - -0.2 286,852 - -0.0 286,859 + +0.0 286,863 + -0.3 286,907 + +0.2 286,908 - -1.3 286,948 - -0.1 287,015 - +0.6 287,118 + CA265_RS01135 0.13 +1.0 287,118 + CA265_RS01135 0.13 -0.8 287,148 - CA265_RS01135 0.14 +0.1 287,159 + CA265_RS01135 0.15 +0.0 287,220 + CA265_RS01135 0.17 -0.1 287,307 + CA265_RS01135 0.20 +0.1 287,310 + CA265_RS01135 0.20 +0.3 287,310 + CA265_RS01135 0.20 -1.2 287,311 - CA265_RS01135 0.21 +1.0 287,388 + CA265_RS01135 0.24 -0.4 287,451 - CA265_RS01135 0.26 -0.4 287,501 + CA265_RS01135 0.28 -0.5 287,573 + CA265_RS01135 0.31 -0.2 287,573 + CA265_RS01135 0.31 +0.2 287,581 + CA265_RS01135 0.31 -0.6 287,582 - CA265_RS01135 0.31 -0.2 287,648 + CA265_RS01135 0.34 -0.4
Or see this region's nucleotide sequence