Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01120

Experiment: R2A with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01115 and CA265_RS01120 are separated by 64 nucleotidesCA265_RS01120 and CA265_RS01125 are separated by 197 nucleotides CA265_RS01115: CA265_RS01115 - hypothetical protein, at 283,739 to 284,737 _RS01115 CA265_RS01120: CA265_RS01120 - hypothetical protein, at 284,802 to 284,981 _RS01120 CA265_RS01125: CA265_RS01125 - gluconate permease, at 285,179 to 286,468 _RS01125 Position (kb) 284 285Strain fitness (log2 ratio) -1 0 1 2at 285.014 kb on - strandat 285.051 kb on + strandat 285.052 kb on - strandat 285.121 kb on + strandat 285.130 kb on + strandat 285.130 kb on + strandat 285.131 kb on - strandat 285.218 kb on + strandat 285.285 kb on + strandat 285.317 kb on + strand, within CA265_RS01125at 285.318 kb on - strand, within CA265_RS01125at 285.539 kb on - strand, within CA265_RS01125at 285.656 kb on + strand, within CA265_RS01125at 285.657 kb on - strand, within CA265_RS01125at 285.713 kb on - strand, within CA265_RS01125at 285.724 kb on + strand, within CA265_RS01125at 285.756 kb on - strand, within CA265_RS01125at 285.756 kb on - strand, within CA265_RS01125at 285.919 kb on + strand, within CA265_RS01125at 285.929 kb on + strand, within CA265_RS01125at 285.930 kb on - strand, within CA265_RS01125at 285.955 kb on + strand, within CA265_RS01125at 285.964 kb on - strand, within CA265_RS01125

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM
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285,014 - +0.2
285,051 + -0.7
285,052 - +0.3
285,121 + +0.7
285,130 + -0.7
285,130 + -0.2
285,131 - -0.2
285,218 + +0.8
285,285 + +0.1
285,317 + CA265_RS01125 0.11 +0.1
285,318 - CA265_RS01125 0.11 -1.0
285,539 - CA265_RS01125 0.28 -0.1
285,656 + CA265_RS01125 0.37 -0.2
285,657 - CA265_RS01125 0.37 -0.3
285,713 - CA265_RS01125 0.41 -0.5
285,724 + CA265_RS01125 0.42 +1.8
285,756 - CA265_RS01125 0.45 -0.1
285,756 - CA265_RS01125 0.45 -1.2
285,919 + CA265_RS01125 0.57 -0.8
285,929 + CA265_RS01125 0.58 +1.6
285,930 - CA265_RS01125 0.58 -0.0
285,955 + CA265_RS01125 0.60 -0.1
285,964 - CA265_RS01125 0.61 +0.1

Or see this region's nucleotide sequence