Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22710 and BPHYT_RS22715 are separated by 442 nucleotides BPHYT_RS22715 and BPHYT_RS22720 are separated by 178 nucleotides
BPHYT_RS22710: BPHYT_RS22710 - XRE family transcriptional regulator, at 650,350 to 650,919
_RS22710
BPHYT_RS22715: BPHYT_RS22715 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) <small>(from data)</small>, at 651,362 to 652,294
_RS22715
BPHYT_RS22720: BPHYT_RS22720 - LysR family transcriptional regulator, at 652,473 to 653,456
_RS22720
Position (kb) 651
652
653 Strain fitness (log2 ratio) -2
-1
0
1 at 650.410 kb on - strand, within BPHYT_RS22710 at 650.449 kb on - strand, within BPHYT_RS22710 at 650.784 kb on + strand, within BPHYT_RS22710 at 650.825 kb on + strand, within BPHYT_RS22710 at 650.948 kb on + strand at 650.949 kb on - strand at 650.954 kb on - strand at 650.976 kb on + strand at 650.976 kb on + strand at 651.081 kb on - strand at 651.198 kb on - strand at 651.198 kb on - strand at 651.198 kb on - strand at 651.363 kb on + strand at 651.364 kb on - strand at 651.598 kb on - strand, within BPHYT_RS22715 at 651.598 kb on - strand, within BPHYT_RS22715 at 651.916 kb on - strand, within BPHYT_RS22715 at 651.916 kb on - strand, within BPHYT_RS22715 at 652.024 kb on - strand, within BPHYT_RS22715 at 652.408 kb on + strand at 652.411 kb on - strand at 652.411 kb on - strand at 652.760 kb on - strand, within BPHYT_RS22720 at 652.974 kb on + strand, within BPHYT_RS22720 at 652.975 kb on - strand, within BPHYT_RS22720 at 652.981 kb on - strand, within BPHYT_RS22720 at 653.091 kb on + strand, within BPHYT_RS22720
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 650,410 - BPHYT_RS22710 0.11 +1.3 650,449 - BPHYT_RS22710 0.17 +0.2 650,784 + BPHYT_RS22710 0.76 +0.7 650,825 + BPHYT_RS22710 0.83 -2.0 650,948 + +0.3 650,949 - +0.7 650,954 - +0.1 650,976 + +0.1 650,976 + +0.4 651,081 - +0.6 651,198 - -0.0 651,198 - -0.4 651,198 - +0.5 651,363 + +0.8 651,364 - +0.7 651,598 - BPHYT_RS22715 0.25 +0.4 651,598 - BPHYT_RS22715 0.25 +0.3 651,916 - BPHYT_RS22715 0.59 -0.0 651,916 - BPHYT_RS22715 0.59 +0.2 652,024 - BPHYT_RS22715 0.71 +0.4 652,408 + -0.4 652,411 - -0.4 652,411 - +0.6 652,760 - BPHYT_RS22720 0.29 +0.2 652,974 + BPHYT_RS22720 0.51 -0.2 652,975 - BPHYT_RS22720 0.51 +0.2 652,981 - BPHYT_RS22720 0.52 +0.1 653,091 + BPHYT_RS22720 0.63 -0.0
Or see this region's nucleotide sequence