Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06030

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06015 and BPHYT_RS06020 are separated by 116 nucleotidesBPHYT_RS06020 and BPHYT_RS06025 are separated by 66 nucleotidesBPHYT_RS06025 and BPHYT_RS06030 overlap by 1 nucleotidesBPHYT_RS06030 and BPHYT_RS06035 are separated by 203 nucleotides BPHYT_RS06015: BPHYT_RS06015 - spermidine synthase, at 1,369,158 to 1,370,090 _RS06015 BPHYT_RS06020: BPHYT_RS06020 - hypothetical protein, at 1,370,207 to 1,370,443 _RS06020 BPHYT_RS06025: BPHYT_RS06025 - hypothetical protein, at 1,370,510 to 1,370,755 _RS06025 BPHYT_RS06030: BPHYT_RS06030 - sodium:solute symporter, at 1,370,755 to 1,372,305 _RS06030 BPHYT_RS06035: BPHYT_RS06035 - membrane protein, at 1,372,509 to 1,373,579 _RS06035 Position (kb) 1370 1371 1372 1373Strain fitness (log2 ratio) -1 0 1at 1370.030 kb on + strandat 1370.407 kb on + strand, within BPHYT_RS06020at 1370.408 kb on - strand, within BPHYT_RS06020at 1370.410 kb on - strand, within BPHYT_RS06020at 1370.489 kb on + strandat 1370.492 kb on + strandat 1370.493 kb on - strandat 1370.600 kb on + strand, within BPHYT_RS06025at 1370.601 kb on - strand, within BPHYT_RS06025at 1370.697 kb on - strand, within BPHYT_RS06025at 1370.766 kb on - strandat 1370.817 kb on + strandat 1370.927 kb on - strand, within BPHYT_RS06030at 1370.936 kb on - strand, within BPHYT_RS06030at 1371.001 kb on + strand, within BPHYT_RS06030at 1371.016 kb on + strand, within BPHYT_RS06030at 1371.016 kb on + strand, within BPHYT_RS06030at 1371.017 kb on - strand, within BPHYT_RS06030at 1371.017 kb on - strand, within BPHYT_RS06030at 1371.074 kb on - strand, within BPHYT_RS06030at 1371.074 kb on - strand, within BPHYT_RS06030at 1371.074 kb on - strand, within BPHYT_RS06030at 1371.166 kb on + strand, within BPHYT_RS06030at 1371.286 kb on + strand, within BPHYT_RS06030at 1371.286 kb on + strand, within BPHYT_RS06030at 1371.286 kb on + strand, within BPHYT_RS06030at 1371.287 kb on - strand, within BPHYT_RS06030at 1371.287 kb on - strand, within BPHYT_RS06030at 1371.682 kb on + strand, within BPHYT_RS06030at 1371.683 kb on - strand, within BPHYT_RS06030at 1371.733 kb on + strand, within BPHYT_RS06030at 1371.734 kb on - strand, within BPHYT_RS06030at 1372.033 kb on + strand, within BPHYT_RS06030at 1372.282 kb on + strandat 1372.282 kb on + strandat 1372.533 kb on + strandat 1372.797 kb on + strand, within BPHYT_RS06035at 1372.798 kb on - strand, within BPHYT_RS06035at 1372.798 kb on - strand, within BPHYT_RS06035at 1372.858 kb on - strand, within BPHYT_RS06035at 1373.007 kb on + strand, within BPHYT_RS06035at 1373.007 kb on + strand, within BPHYT_RS06035at 1373.007 kb on + strand, within BPHYT_RS06035at 1373.008 kb on - strand, within BPHYT_RS06035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,370,030 + -0.2
1,370,407 + BPHYT_RS06020 0.84 -0.0
1,370,408 - BPHYT_RS06020 0.85 -0.7
1,370,410 - BPHYT_RS06020 0.86 +0.1
1,370,489 + +0.2
1,370,492 + +0.1
1,370,493 - +0.4
1,370,600 + BPHYT_RS06025 0.37 -0.3
1,370,601 - BPHYT_RS06025 0.37 +0.2
1,370,697 - BPHYT_RS06025 0.76 +0.6
1,370,766 - +0.1
1,370,817 + -0.2
1,370,927 - BPHYT_RS06030 0.11 +0.1
1,370,936 - BPHYT_RS06030 0.12 -1.1
1,371,001 + BPHYT_RS06030 0.16 -0.6
1,371,016 + BPHYT_RS06030 0.17 -1.3
1,371,016 + BPHYT_RS06030 0.17 +0.3
1,371,017 - BPHYT_RS06030 0.17 +0.1
1,371,017 - BPHYT_RS06030 0.17 +1.1
1,371,074 - BPHYT_RS06030 0.21 +0.0
1,371,074 - BPHYT_RS06030 0.21 +0.2
1,371,074 - BPHYT_RS06030 0.21 -0.4
1,371,166 + BPHYT_RS06030 0.26 -0.2
1,371,286 + BPHYT_RS06030 0.34 +0.1
1,371,286 + BPHYT_RS06030 0.34 -0.1
1,371,286 + BPHYT_RS06030 0.34 +0.1
1,371,287 - BPHYT_RS06030 0.34 -0.2
1,371,287 - BPHYT_RS06030 0.34 -0.4
1,371,682 + BPHYT_RS06030 0.60 -0.3
1,371,683 - BPHYT_RS06030 0.60 +0.8
1,371,733 + BPHYT_RS06030 0.63 -0.7
1,371,734 - BPHYT_RS06030 0.63 +0.1
1,372,033 + BPHYT_RS06030 0.82 +0.2
1,372,282 + +0.7
1,372,282 + -0.3
1,372,533 + -0.2
1,372,797 + BPHYT_RS06035 0.27 -0.0
1,372,798 - BPHYT_RS06035 0.27 -0.5
1,372,798 - BPHYT_RS06035 0.27 -0.0
1,372,858 - BPHYT_RS06035 0.33 -1.1
1,373,007 + BPHYT_RS06035 0.46 -0.5
1,373,007 + BPHYT_RS06035 0.46 -0.6
1,373,007 + BPHYT_RS06035 0.46 -0.2
1,373,008 - BPHYT_RS06035 0.47 -0.1

Or see this region's nucleotide sequence