Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14280

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14270 and AO356_14275 are separated by 478 nucleotidesAO356_14275 and AO356_14280 are separated by 199 nucleotidesAO356_14280 and AO356_14285 are separated by 8 nucleotidesAO356_14285 and AO356_14290 are separated by 74 nucleotides AO356_14270: AO356_14270 - DNA primase, at 3,245,504 to 3,247,462 _14270 AO356_14275: AO356_14275 - 30S ribosomal protein S21, at 3,247,941 to 3,248,156 _14275 AO356_14280: AO356_14280 - tRNA threonylcarbamoyl adenosine modification protein TsaD, at 3,248,356 to 3,249,381 _14280 AO356_14285: AO356_14285 - glycerol-3-phosphate acyltransferase, at 3,249,390 to 3,249,959 _14285 AO356_14290: AO356_14290 - dihydroneopterin aldolase, at 3,250,034 to 3,250,387 _14290 AO356_14295: AO356_14295 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 3,250,378 to 3,250,896 _14295 Position (kb) 3248 3249 3250Strain fitness (log2 ratio) -1 0 1at 3247.490 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.619 kb on - strandat 3247.619 kb on - strandat 3247.619 kb on - strandat 3247.625 kb on - strandat 3247.682 kb on - strandat 3247.872 kb on - strandat 3247.872 kb on - strandat 3247.888 kb on - strandat 3248.312 kb on + strandat 3248.360 kb on + strandat 3249.387 kb on + strandat 3249.388 kb on - strandat 3249.391 kb on + strandat 3249.392 kb on - strandat 3249.392 kb on - strandat 3249.426 kb on + strandat 3249.426 kb on + strandat 3249.426 kb on + strandat 3249.426 kb on + strandat 3249.427 kb on - strandat 3249.427 kb on - strandat 3249.565 kb on + strand, within AO356_14285at 3249.565 kb on + strand, within AO356_14285at 3249.565 kb on + strand, within AO356_14285at 3249.566 kb on - strand, within AO356_14285at 3249.673 kb on + strand, within AO356_14285at 3249.673 kb on + strand, within AO356_14285at 3249.674 kb on - strand, within AO356_14285at 3249.674 kb on - strand, within AO356_14285at 3249.674 kb on - strand, within AO356_14285at 3249.931 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,247,490 - +1.0
3,247,588 - -0.4
3,247,588 - +1.1
3,247,588 - +0.3
3,247,588 - -1.5
3,247,588 - -0.7
3,247,588 - +0.4
3,247,588 - +0.5
3,247,615 - +0.4
3,247,615 - -0.4
3,247,615 - -0.6
3,247,615 - -0.1
3,247,615 - +0.1
3,247,615 - +0.4
3,247,615 - +0.8
3,247,619 - +0.3
3,247,619 - +0.2
3,247,619 - -1.3
3,247,625 - +1.2
3,247,682 - -0.2
3,247,872 - +1.4
3,247,872 - -0.8
3,247,888 - +1.6
3,248,312 + -0.8
3,248,360 + +0.2
3,249,387 + +0.2
3,249,388 - -0.9
3,249,391 + -0.2
3,249,392 - -0.7
3,249,392 - -0.2
3,249,426 + +1.0
3,249,426 + +0.1
3,249,426 + -0.1
3,249,426 + -0.8
3,249,427 - -1.2
3,249,427 - -0.4
3,249,565 + AO356_14285 0.31 -0.6
3,249,565 + AO356_14285 0.31 -0.7
3,249,565 + AO356_14285 0.31 -0.1
3,249,566 - AO356_14285 0.31 -1.5
3,249,673 + AO356_14285 0.50 -0.5
3,249,673 + AO356_14285 0.50 -0.9
3,249,674 - AO356_14285 0.50 +0.2
3,249,674 - AO356_14285 0.50 -0.1
3,249,674 - AO356_14285 0.50 +0.2
3,249,931 + +0.5
3,249,962 + -0.9
3,249,962 + +0.1
3,249,962 + +0.2
3,249,962 + +0.8
3,249,962 + -0.6
3,249,962 + -0.6
3,249,966 + -0.2
3,249,966 + +0.2
3,249,966 + +0.4
3,249,966 + +0.3
3,249,966 + +0.4
3,249,966 + +0.5
3,249,966 + +0.4

Or see this region's nucleotide sequence