Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10040

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10035 and AO356_10040 are separated by 209 nucleotidesAO356_10040 and AO356_10045 overlap by 4 nucleotidesAO356_10045 and AO356_10050 overlap by 4 nucleotides AO356_10035: AO356_10035 - hypothetical protein, at 2,263,308 to 2,266,220 _10035 AO356_10040: AO356_10040 - dTDP-glucose 4,6-dehydratase, at 2,266,430 to 2,267,512 _10040 AO356_10045: AO356_10045 - glucose-1-phosphate thymidylyltransferase, at 2,267,509 to 2,268,384 _10045 AO356_10050: AO356_10050 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,268,381 to 2,268,926 _10050 Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -2 -1 0 1at 2265.495 kb on - strand, within AO356_10035at 2265.703 kb on + strand, within AO356_10035at 2265.703 kb on + strand, within AO356_10035at 2265.703 kb on + strand, within AO356_10035at 2265.703 kb on + strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.820 kb on - strand, within AO356_10035at 2265.871 kb on + strand, within AO356_10035at 2265.871 kb on + strand, within AO356_10035at 2265.871 kb on + strand, within AO356_10035at 2265.871 kb on + strand, within AO356_10035at 2265.872 kb on - strand, within AO356_10035at 2265.872 kb on - strand, within AO356_10035at 2266.011 kb on + strandat 2266.011 kb on + strandat 2266.011 kb on + strandat 2266.012 kb on - strandat 2266.012 kb on - strandat 2266.012 kb on - strandat 2266.012 kb on - strandat 2266.012 kb on - strandat 2266.027 kb on + strandat 2266.027 kb on + strandat 2266.027 kb on + strandat 2266.028 kb on - strandat 2266.081 kb on + strandat 2266.081 kb on + strandat 2266.081 kb on + strandat 2266.133 kb on - strandat 2266.208 kb on + strandat 2266.209 kb on - strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.256 kb on - strandat 2266.256 kb on - strandat 2266.256 kb on - strandat 2266.278 kb on + strandat 2266.279 kb on - strandat 2266.279 kb on - strandat 2266.301 kb on + strandat 2266.326 kb on + strandat 2266.327 kb on - strandat 2266.350 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.394 kb on + strandat 2266.394 kb on + strandat 2266.394 kb on + strandat 2266.395 kb on - strandat 2266.395 kb on - strandat 2266.395 kb on - strandat 2266.423 kb on + strandat 2267.462 kb on + strandat 2267.462 kb on + strandat 2267.463 kb on - strandat 2267.463 kb on - strandat 2267.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,265,495 - AO356_10035 0.75 +0.2
2,265,703 + AO356_10035 0.82 +1.7
2,265,703 + AO356_10035 0.82 +0.4
2,265,703 + AO356_10035 0.82 -0.6
2,265,703 + AO356_10035 0.82 +0.4
2,265,704 - AO356_10035 0.82 -0.9
2,265,704 - AO356_10035 0.82 +0.5
2,265,704 - AO356_10035 0.82 -0.1
2,265,704 - AO356_10035 0.82 -0.2
2,265,704 - AO356_10035 0.82 -0.1
2,265,704 - AO356_10035 0.82 +0.2
2,265,704 - AO356_10035 0.82 -0.8
2,265,704 - AO356_10035 0.82 +1.1
2,265,820 - AO356_10035 0.86 +1.0
2,265,871 + AO356_10035 0.88 +0.9
2,265,871 + AO356_10035 0.88 +0.0
2,265,871 + AO356_10035 0.88 -1.0
2,265,871 + AO356_10035 0.88 +0.2
2,265,872 - AO356_10035 0.88 +0.6
2,265,872 - AO356_10035 0.88 +0.6
2,266,011 + -0.4
2,266,011 + -0.8
2,266,011 + +0.4
2,266,012 - +0.2
2,266,012 - +0.3
2,266,012 - -0.7
2,266,012 - -1.2
2,266,012 - +0.5
2,266,027 + +1.1
2,266,027 + -0.1
2,266,027 + -1.5
2,266,028 - +0.4
2,266,081 + -0.3
2,266,081 + +1.1
2,266,081 + +0.9
2,266,133 - +0.3
2,266,208 + -0.8
2,266,209 - +1.2
2,266,220 + -1.0
2,266,220 + -0.4
2,266,220 + +0.1
2,266,220 + -0.0
2,266,220 + -0.6
2,266,220 + -0.1
2,266,220 + -0.5
2,266,220 + -0.4
2,266,220 + +0.1
2,266,220 + +0.5
2,266,220 + -0.5
2,266,221 - +0.1
2,266,221 - +1.0
2,266,221 - +0.8
2,266,221 - +1.6
2,266,221 - +0.6
2,266,221 - -0.9
2,266,221 - -0.7
2,266,221 - +0.5
2,266,221 - +0.9
2,266,255 + -0.3
2,266,255 + -0.1
2,266,255 + +1.0
2,266,255 + -0.4
2,266,255 + -0.7
2,266,255 + +0.1
2,266,256 - +0.5
2,266,256 - +0.4
2,266,256 - +0.6
2,266,278 + -0.5
2,266,279 - -0.4
2,266,279 - -0.9
2,266,301 + +0.4
2,266,326 + -0.5
2,266,327 - -0.7
2,266,350 + -0.9
2,266,385 + -0.2
2,266,385 + -0.3
2,266,385 + -0.0
2,266,385 + -0.4
2,266,385 + +0.1
2,266,385 + +0.2
2,266,385 + +0.0
2,266,386 - -0.1
2,266,386 - -0.4
2,266,386 - -0.1
2,266,386 - +0.2
2,266,386 - +0.3
2,266,386 - +0.3
2,266,386 - -0.9
2,266,386 - +0.6
2,266,394 + +0.4
2,266,394 + +0.0
2,266,394 + -0.4
2,266,395 - +0.1
2,266,395 - -0.2
2,266,395 - +0.0
2,266,423 + +0.7
2,267,462 + -0.2
2,267,462 + -0.2
2,267,463 - -1.9
2,267,463 - -0.2
2,267,463 - -0.2

Or see this region's nucleotide sequence