Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3973 and HP15_3974 overlap by 14 nucleotides HP15_3974 and HP15_3975 overlap by 4 nucleotides HP15_3975 and HP15_3976 are separated by 87 nucleotides
HP15_3973: HP15_3973 - long-chain-fatty-acid-CoA ligase, at 4,202,337 to 4,204,427
_3973
HP15_3974: HP15_3974 - short chain dehydrogenase, at 4,204,414 to 4,205,196
_3974
HP15_3975: HP15_3975 - conserved hypothetical protein, secreted, at 4,205,193 to 4,205,813
_3975
HP15_3976: HP15_3976 - protein containing diguanylate cyclase, predicted domains, at 4,205,901 to 4,207,421
_3976
Position (kb) 4204
4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4203.472 kb on + strand, within HP15_3973 at 4203.536 kb on + strand, within HP15_3973 at 4203.567 kb on + strand, within HP15_3973 at 4203.596 kb on + strand, within HP15_3973 at 4203.602 kb on + strand, within HP15_3973 at 4203.604 kb on - strand, within HP15_3973 at 4203.649 kb on - strand, within HP15_3973 at 4203.792 kb on + strand, within HP15_3973 at 4203.835 kb on + strand, within HP15_3973 at 4203.911 kb on + strand, within HP15_3973 at 4203.971 kb on - strand, within HP15_3973 at 4204.020 kb on - strand, within HP15_3973 at 4204.039 kb on - strand, within HP15_3973 at 4204.039 kb on - strand, within HP15_3973 at 4204.066 kb on + strand, within HP15_3973 at 4204.148 kb on - strand, within HP15_3973 at 4204.222 kb on - strand at 4204.378 kb on + strand at 4204.640 kb on + strand, within HP15_3974 at 4204.648 kb on - strand, within HP15_3974 at 4204.660 kb on - strand, within HP15_3974 at 4204.660 kb on - strand, within HP15_3974 at 4204.665 kb on - strand, within HP15_3974 at 4204.693 kb on + strand, within HP15_3974 at 4204.715 kb on - strand, within HP15_3974 at 4204.789 kb on + strand, within HP15_3974 at 4204.797 kb on - strand, within HP15_3974 at 4204.797 kb on - strand, within HP15_3974 at 4204.810 kb on + strand, within HP15_3974 at 4204.859 kb on + strand, within HP15_3974 at 4204.897 kb on + strand, within HP15_3974 at 4204.905 kb on - strand, within HP15_3974 at 4204.928 kb on + strand, within HP15_3974 at 4204.956 kb on - strand, within HP15_3974 at 4204.978 kb on + strand, within HP15_3974 at 4205.001 kb on - strand, within HP15_3974 at 4205.126 kb on - strand at 4205.185 kb on - strand at 4205.253 kb on + strand at 4205.331 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.465 kb on + strand, within HP15_3975 at 4205.465 kb on + strand, within HP15_3975 at 4205.549 kb on - strand, within HP15_3975 at 4205.690 kb on + strand, within HP15_3975 at 4205.696 kb on + strand, within HP15_3975 at 4205.704 kb on - strand, within HP15_3975 at 4205.787 kb on + strand at 4205.787 kb on + strand at 4205.846 kb on - strand at 4205.887 kb on + strand at 4206.119 kb on + strand, within HP15_3976
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 4,203,472 + HP15_3973 0.54 -0.1 4,203,536 + HP15_3973 0.57 -0.1 4,203,567 + HP15_3973 0.59 +0.5 4,203,596 + HP15_3973 0.60 +0.3 4,203,602 + HP15_3973 0.60 +0.2 4,203,604 - HP15_3973 0.61 +0.4 4,203,649 - HP15_3973 0.63 -0.2 4,203,792 + HP15_3973 0.70 +0.1 4,203,835 + HP15_3973 0.72 +0.0 4,203,911 + HP15_3973 0.75 -0.1 4,203,971 - HP15_3973 0.78 +1.9 4,204,020 - HP15_3973 0.80 +0.1 4,204,039 - HP15_3973 0.81 -3.6 4,204,039 - HP15_3973 0.81 +1.0 4,204,066 + HP15_3973 0.83 +0.5 4,204,148 - HP15_3973 0.87 +0.6 4,204,222 - -0.2 4,204,378 + -0.1 4,204,640 + HP15_3974 0.29 +0.0 4,204,648 - HP15_3974 0.30 -0.2 4,204,660 - HP15_3974 0.31 +1.4 4,204,660 - HP15_3974 0.31 -0.2 4,204,665 - HP15_3974 0.32 -0.5 4,204,693 + HP15_3974 0.36 +0.5 4,204,715 - HP15_3974 0.38 +0.3 4,204,789 + HP15_3974 0.48 -0.4 4,204,797 - HP15_3974 0.49 +0.3 4,204,797 - HP15_3974 0.49 +0.2 4,204,810 + HP15_3974 0.51 -0.0 4,204,859 + HP15_3974 0.57 +0.2 4,204,897 + HP15_3974 0.62 +0.3 4,204,905 - HP15_3974 0.63 -0.3 4,204,928 + HP15_3974 0.66 -0.0 4,204,956 - HP15_3974 0.69 -0.0 4,204,978 + HP15_3974 0.72 -0.5 4,205,001 - HP15_3974 0.75 +0.4 4,205,126 - -0.4 4,205,185 - -0.7 4,205,253 + -0.3 4,205,331 + HP15_3975 0.22 +1.3 4,205,410 + HP15_3975 0.35 +0.8 4,205,410 + HP15_3975 0.35 -0.0 4,205,410 + HP15_3975 0.35 +0.5 4,205,410 + HP15_3975 0.35 -0.5 4,205,410 + HP15_3975 0.35 +0.1 4,205,410 + HP15_3975 0.35 +0.1 4,205,418 - HP15_3975 0.36 -0.0 4,205,418 - HP15_3975 0.36 -0.2 4,205,418 - HP15_3975 0.36 +0.1 4,205,465 + HP15_3975 0.44 -0.5 4,205,465 + HP15_3975 0.44 -0.0 4,205,549 - HP15_3975 0.57 -0.0 4,205,690 + HP15_3975 0.80 -0.0 4,205,696 + HP15_3975 0.81 +0.5 4,205,704 - HP15_3975 0.82 +0.2 4,205,787 + -0.4 4,205,787 + -0.3 4,205,846 - -0.3 4,205,887 + +0.3 4,206,119 + HP15_3976 0.14 +0.4
Or see this region's nucleotide sequence