Strain Fitness in Marinobacter adhaerens HP15 around HP15_2731

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2730 and HP15_2731 are separated by 74 nucleotidesHP15_2731 and HP15_2732 are separated by 210 nucleotides HP15_2730: HP15_2730 - mechanosensitive ion channel family protein, at 2,881,077 to 2,882,126 _2730 HP15_2731: HP15_2731 - choline/carnitine/betaine transporter, at 2,882,201 to 2,883,685 _2731 HP15_2732: HP15_2732 - drug resistance transporter, Bcr/CflA subfamily, at 2,883,896 to 2,885,089 _2732 Position (kb) 2882 2883 2884Strain fitness (log2 ratio) -1 0 1 2at 2881.367 kb on + strand, within HP15_2730at 2881.585 kb on - strand, within HP15_2730at 2881.668 kb on + strand, within HP15_2730at 2881.668 kb on + strand, within HP15_2730at 2881.679 kb on + strand, within HP15_2730at 2881.687 kb on - strand, within HP15_2730at 2881.737 kb on + strand, within HP15_2730at 2881.746 kb on - strand, within HP15_2730at 2881.817 kb on - strand, within HP15_2730at 2881.854 kb on + strand, within HP15_2730at 2881.856 kb on + strand, within HP15_2730at 2881.868 kb on + strand, within HP15_2730at 2882.001 kb on - strand, within HP15_2730at 2882.160 kb on + strandat 2882.199 kb on + strandat 2882.207 kb on - strandat 2882.250 kb on + strandat 2882.250 kb on + strandat 2882.258 kb on - strandat 2882.321 kb on + strandat 2882.329 kb on - strandat 2882.418 kb on + strand, within HP15_2731at 2882.452 kb on + strand, within HP15_2731at 2882.530 kb on - strand, within HP15_2731at 2882.542 kb on - strand, within HP15_2731at 2882.571 kb on + strand, within HP15_2731at 2882.581 kb on + strand, within HP15_2731at 2882.597 kb on - strand, within HP15_2731at 2882.619 kb on + strand, within HP15_2731at 2882.627 kb on - strand, within HP15_2731at 2882.637 kb on - strand, within HP15_2731at 2882.762 kb on + strand, within HP15_2731at 2882.762 kb on + strand, within HP15_2731at 2882.770 kb on - strand, within HP15_2731at 2882.868 kb on + strandat 2882.868 kb on + strand, within HP15_2731at 2882.876 kb on - strand, within HP15_2731at 2882.961 kb on + strand, within HP15_2731at 2882.969 kb on - strand, within HP15_2731at 2883.002 kb on + strand, within HP15_2731at 2883.103 kb on + strand, within HP15_2731at 2883.153 kb on + strand, within HP15_2731at 2883.219 kb on + strand, within HP15_2731at 2883.227 kb on - strand, within HP15_2731at 2883.232 kb on - strand, within HP15_2731at 2883.245 kb on + strand, within HP15_2731at 2883.253 kb on - strand, within HP15_2731at 2883.277 kb on - strand, within HP15_2731at 2883.279 kb on + strand, within HP15_2731at 2883.287 kb on - strand, within HP15_2731at 2883.443 kb on - strand, within HP15_2731at 2883.479 kb on - strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.520 kb on + strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.606 kb on + strandat 2883.696 kb on + strandat 2883.704 kb on - strandat 2883.753 kb on + strandat 2883.760 kb on + strandat 2883.784 kb on + strandat 2883.896 kb on - strandat 2883.933 kb on - strandat 2883.933 kb on - strandat 2884.058 kb on - strand, within HP15_2732at 2884.104 kb on + strand, within HP15_2732at 2884.162 kb on + strand, within HP15_2732at 2884.212 kb on - strand, within HP15_2732at 2884.229 kb on + strand, within HP15_2732at 2884.272 kb on + strand, within HP15_2732at 2884.368 kb on - strand, within HP15_2732at 2884.368 kb on - strand, within HP15_2732at 2884.368 kb on - strand, within HP15_2732at 2884.437 kb on + strand, within HP15_2732at 2884.573 kb on + strand, within HP15_2732at 2884.671 kb on + strand, within HP15_2732

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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2,881,367 + HP15_2730 0.28 +0.0
2,881,585 - HP15_2730 0.48 -0.2
2,881,668 + HP15_2730 0.56 -0.7
2,881,668 + HP15_2730 0.56 -1.4
2,881,679 + HP15_2730 0.57 -0.5
2,881,687 - HP15_2730 0.58 -0.6
2,881,737 + HP15_2730 0.63 +1.3
2,881,746 - HP15_2730 0.64 -0.0
2,881,817 - HP15_2730 0.70 +0.3
2,881,854 + HP15_2730 0.74 -0.4
2,881,856 + HP15_2730 0.74 +0.3
2,881,868 + HP15_2730 0.75 +0.0
2,882,001 - HP15_2730 0.88 +0.2
2,882,160 + +0.8
2,882,199 + +0.2
2,882,207 - -0.2
2,882,250 + +0.0
2,882,250 + +0.4
2,882,258 - +0.4
2,882,321 + +0.6
2,882,329 - +0.4
2,882,418 + HP15_2731 0.15 -0.1
2,882,452 + HP15_2731 0.17 +0.6
2,882,530 - HP15_2731 0.22 +0.3
2,882,542 - HP15_2731 0.23 -0.4
2,882,571 + HP15_2731 0.25 +0.8
2,882,581 + HP15_2731 0.26 +0.1
2,882,597 - HP15_2731 0.27 -0.1
2,882,619 + HP15_2731 0.28 -0.1
2,882,627 - HP15_2731 0.29 +0.6
2,882,637 - HP15_2731 0.29 +0.4
2,882,762 + HP15_2731 0.38 -0.6
2,882,762 + HP15_2731 0.38 -0.0
2,882,770 - HP15_2731 0.38 +0.7
2,882,868 + +0.0
2,882,868 + HP15_2731 0.45 +0.7
2,882,876 - HP15_2731 0.45 +0.3
2,882,961 + HP15_2731 0.51 +0.4
2,882,969 - HP15_2731 0.52 -1.7
2,883,002 + HP15_2731 0.54 +0.2
2,883,103 + HP15_2731 0.61 +0.2
2,883,153 + HP15_2731 0.64 +0.2
2,883,219 + HP15_2731 0.69 +0.3
2,883,227 - HP15_2731 0.69 -0.2
2,883,232 - HP15_2731 0.69 +0.8
2,883,245 + HP15_2731 0.70 +0.5
2,883,253 - HP15_2731 0.71 +0.5
2,883,277 - HP15_2731 0.72 +0.8
2,883,279 + HP15_2731 0.73 -0.4
2,883,287 - HP15_2731 0.73 +0.0
2,883,443 - HP15_2731 0.84 -0.0
2,883,479 - HP15_2731 0.86 +0.1
2,883,515 + HP15_2731 0.88 -0.3
2,883,515 + HP15_2731 0.88 -0.1
2,883,515 + HP15_2731 0.88 -0.4
2,883,515 + HP15_2731 0.88 +0.5
2,883,515 + HP15_2731 0.88 -0.3
2,883,520 + HP15_2731 0.89 +0.3
2,883,523 - HP15_2731 0.89 +0.3
2,883,523 - HP15_2731 0.89 -0.3
2,883,523 - HP15_2731 0.89 -0.2
2,883,523 - HP15_2731 0.89 +0.3
2,883,523 - HP15_2731 0.89 +0.3
2,883,606 + +2.7
2,883,696 + -0.0
2,883,704 - +0.3
2,883,753 + +0.0
2,883,760 + +0.5
2,883,784 + -0.2
2,883,896 - +0.1
2,883,933 - -0.2
2,883,933 - +0.1
2,884,058 - HP15_2732 0.14 +0.3
2,884,104 + HP15_2732 0.17 +0.1
2,884,162 + HP15_2732 0.22 -0.3
2,884,212 - HP15_2732 0.26 -0.2
2,884,229 + HP15_2732 0.28 +0.6
2,884,272 + HP15_2732 0.31 -0.0
2,884,368 - HP15_2732 0.40 +0.4
2,884,368 - HP15_2732 0.40 -0.6
2,884,368 - HP15_2732 0.40 +0.3
2,884,437 + HP15_2732 0.45 -0.3
2,884,573 + HP15_2732 0.57 -0.1
2,884,671 + HP15_2732 0.65 +0.1

Or see this region's nucleotide sequence