Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2730 and HP15_2731 are separated by 74 nucleotides HP15_2731 and HP15_2732 are separated by 210 nucleotides
HP15_2730: HP15_2730 - mechanosensitive ion channel family protein, at 2,881,077 to 2,882,126
_2730
HP15_2731: HP15_2731 - choline/carnitine/betaine transporter, at 2,882,201 to 2,883,685
_2731
HP15_2732: HP15_2732 - drug resistance transporter, Bcr/CflA subfamily, at 2,883,896 to 2,885,089
_2732
Position (kb)
2882
2883
2884 Strain fitness (log2 ratio)
-1
0
1
2 at 2881.367 kb on + strand, within HP15_2730 at 2881.585 kb on - strand, within HP15_2730 at 2881.668 kb on + strand, within HP15_2730 at 2881.668 kb on + strand, within HP15_2730 at 2881.679 kb on + strand, within HP15_2730 at 2881.687 kb on - strand, within HP15_2730 at 2881.737 kb on + strand, within HP15_2730 at 2881.746 kb on - strand, within HP15_2730 at 2881.817 kb on - strand, within HP15_2730 at 2881.854 kb on + strand, within HP15_2730 at 2881.856 kb on + strand, within HP15_2730 at 2881.868 kb on + strand, within HP15_2730 at 2882.001 kb on - strand, within HP15_2730 at 2882.160 kb on + strand at 2882.199 kb on + strand at 2882.207 kb on - strand at 2882.250 kb on + strand at 2882.250 kb on + strand at 2882.258 kb on - strand at 2882.321 kb on + strand at 2882.329 kb on - strand at 2882.418 kb on + strand, within HP15_2731 at 2882.452 kb on + strand, within HP15_2731 at 2882.530 kb on - strand, within HP15_2731 at 2882.542 kb on - strand, within HP15_2731 at 2882.571 kb on + strand, within HP15_2731 at 2882.581 kb on + strand, within HP15_2731 at 2882.597 kb on - strand, within HP15_2731 at 2882.619 kb on + strand, within HP15_2731 at 2882.627 kb on - strand, within HP15_2731 at 2882.637 kb on - strand, within HP15_2731 at 2882.762 kb on + strand, within HP15_2731 at 2882.762 kb on + strand, within HP15_2731 at 2882.770 kb on - strand, within HP15_2731 at 2882.868 kb on + strand at 2882.868 kb on + strand, within HP15_2731 at 2882.876 kb on - strand, within HP15_2731 at 2882.961 kb on + strand, within HP15_2731 at 2882.969 kb on - strand, within HP15_2731 at 2883.002 kb on + strand, within HP15_2731 at 2883.103 kb on + strand, within HP15_2731 at 2883.153 kb on + strand, within HP15_2731 at 2883.219 kb on + strand, within HP15_2731 at 2883.227 kb on - strand, within HP15_2731 at 2883.232 kb on - strand, within HP15_2731 at 2883.245 kb on + strand, within HP15_2731 at 2883.253 kb on - strand, within HP15_2731 at 2883.277 kb on - strand, within HP15_2731 at 2883.279 kb on + strand, within HP15_2731 at 2883.287 kb on - strand, within HP15_2731 at 2883.443 kb on - strand, within HP15_2731 at 2883.479 kb on - strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.520 kb on + strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.606 kb on + strand at 2883.696 kb on + strand at 2883.704 kb on - strand at 2883.753 kb on + strand at 2883.760 kb on + strand at 2883.784 kb on + strand at 2883.896 kb on - strand at 2883.933 kb on - strand at 2883.933 kb on - strand at 2884.058 kb on - strand, within HP15_2732 at 2884.104 kb on + strand, within HP15_2732 at 2884.162 kb on + strand, within HP15_2732 at 2884.212 kb on - strand, within HP15_2732 at 2884.229 kb on + strand, within HP15_2732 at 2884.272 kb on + strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.437 kb on + strand, within HP15_2732 at 2884.573 kb on + strand, within HP15_2732 at 2884.671 kb on + strand, within HP15_2732
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 2,881,367 + HP15_2730 0.28 +0.0 2,881,585 - HP15_2730 0.48 -0.2 2,881,668 + HP15_2730 0.56 -0.7 2,881,668 + HP15_2730 0.56 -1.4 2,881,679 + HP15_2730 0.57 -0.5 2,881,687 - HP15_2730 0.58 -0.6 2,881,737 + HP15_2730 0.63 +1.3 2,881,746 - HP15_2730 0.64 -0.0 2,881,817 - HP15_2730 0.70 +0.3 2,881,854 + HP15_2730 0.74 -0.4 2,881,856 + HP15_2730 0.74 +0.3 2,881,868 + HP15_2730 0.75 +0.0 2,882,001 - HP15_2730 0.88 +0.2 2,882,160 + +0.8 2,882,199 + +0.2 2,882,207 - -0.2 2,882,250 + +0.0 2,882,250 + +0.4 2,882,258 - +0.4 2,882,321 + +0.6 2,882,329 - +0.4 2,882,418 + HP15_2731 0.15 -0.1 2,882,452 + HP15_2731 0.17 +0.6 2,882,530 - HP15_2731 0.22 +0.3 2,882,542 - HP15_2731 0.23 -0.4 2,882,571 + HP15_2731 0.25 +0.8 2,882,581 + HP15_2731 0.26 +0.1 2,882,597 - HP15_2731 0.27 -0.1 2,882,619 + HP15_2731 0.28 -0.1 2,882,627 - HP15_2731 0.29 +0.6 2,882,637 - HP15_2731 0.29 +0.4 2,882,762 + HP15_2731 0.38 -0.6 2,882,762 + HP15_2731 0.38 -0.0 2,882,770 - HP15_2731 0.38 +0.7 2,882,868 + +0.0 2,882,868 + HP15_2731 0.45 +0.7 2,882,876 - HP15_2731 0.45 +0.3 2,882,961 + HP15_2731 0.51 +0.4 2,882,969 - HP15_2731 0.52 -1.7 2,883,002 + HP15_2731 0.54 +0.2 2,883,103 + HP15_2731 0.61 +0.2 2,883,153 + HP15_2731 0.64 +0.2 2,883,219 + HP15_2731 0.69 +0.3 2,883,227 - HP15_2731 0.69 -0.2 2,883,232 - HP15_2731 0.69 +0.8 2,883,245 + HP15_2731 0.70 +0.5 2,883,253 - HP15_2731 0.71 +0.5 2,883,277 - HP15_2731 0.72 +0.8 2,883,279 + HP15_2731 0.73 -0.4 2,883,287 - HP15_2731 0.73 +0.0 2,883,443 - HP15_2731 0.84 -0.0 2,883,479 - HP15_2731 0.86 +0.1 2,883,515 + HP15_2731 0.88 -0.3 2,883,515 + HP15_2731 0.88 -0.1 2,883,515 + HP15_2731 0.88 -0.4 2,883,515 + HP15_2731 0.88 +0.5 2,883,515 + HP15_2731 0.88 -0.3 2,883,520 + HP15_2731 0.89 +0.3 2,883,523 - HP15_2731 0.89 +0.3 2,883,523 - HP15_2731 0.89 -0.3 2,883,523 - HP15_2731 0.89 -0.2 2,883,523 - HP15_2731 0.89 +0.3 2,883,523 - HP15_2731 0.89 +0.3 2,883,606 + +2.7 2,883,696 + -0.0 2,883,704 - +0.3 2,883,753 + +0.0 2,883,760 + +0.5 2,883,784 + -0.2 2,883,896 - +0.1 2,883,933 - -0.2 2,883,933 - +0.1 2,884,058 - HP15_2732 0.14 +0.3 2,884,104 + HP15_2732 0.17 +0.1 2,884,162 + HP15_2732 0.22 -0.3 2,884,212 - HP15_2732 0.26 -0.2 2,884,229 + HP15_2732 0.28 +0.6 2,884,272 + HP15_2732 0.31 -0.0 2,884,368 - HP15_2732 0.40 +0.4 2,884,368 - HP15_2732 0.40 -0.6 2,884,368 - HP15_2732 0.40 +0.3 2,884,437 + HP15_2732 0.45 -0.3 2,884,573 + HP15_2732 0.57 -0.1 2,884,671 + HP15_2732 0.65 +0.1
Or see this region's nucleotide sequence