Strain Fitness in Dechlorosoma suillum PS around Dsui_2950

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2949 and Dsui_2950 are separated by 132 nucleotidesDsui_2950 and Dsui_2951 are separated by 2 nucleotides Dsui_2949: Dsui_2949 - Fe2+-dicitrate sensor, membrane component, at 3,155,147 to 3,156,166 _2949 Dsui_2950: Dsui_2950 - TonB-dependent siderophore receptor, at 3,156,299 to 3,158,701 _2950 Dsui_2951: Dsui_2951 - putative iron-regulated membrane protein, at 3,158,704 to 3,159,981 _2951 Position (kb) 3156 3157 3158 3159Strain fitness (log2 ratio) -2 -1 0 1 2at 3155.499 kb on + strand, within Dsui_2949at 3155.616 kb on - strand, within Dsui_2949at 3155.852 kb on - strandat 3155.910 kb on + strand, within Dsui_2949at 3156.078 kb on - strandat 3156.111 kb on + strandat 3156.116 kb on + strandat 3156.160 kb on + strandat 3156.160 kb on + strandat 3156.168 kb on - strandat 3156.181 kb on - strandat 3156.251 kb on + strandat 3156.499 kb on - strandat 3156.539 kb on - strandat 3156.601 kb on - strand, within Dsui_2950at 3156.607 kb on - strandat 3156.626 kb on + strand, within Dsui_2950at 3156.627 kb on + strand, within Dsui_2950at 3156.770 kb on + strand, within Dsui_2950at 3156.801 kb on - strandat 3156.882 kb on - strandat 3156.945 kb on + strandat 3156.945 kb on + strand, within Dsui_2950at 3156.953 kb on - strand, within Dsui_2950at 3156.991 kb on + strand, within Dsui_2950at 3156.991 kb on + strandat 3157.021 kb on + strand, within Dsui_2950at 3157.028 kb on + strand, within Dsui_2950at 3157.076 kb on - strandat 3157.182 kb on + strand, within Dsui_2950at 3157.279 kb on + strand, within Dsui_2950at 3157.448 kb on - strand, within Dsui_2950at 3157.515 kb on + strand, within Dsui_2950at 3157.636 kb on + strand, within Dsui_2950at 3157.644 kb on + strand, within Dsui_2950at 3157.893 kb on + strand, within Dsui_2950at 3157.901 kb on - strand, within Dsui_2950at 3157.905 kb on + strandat 3158.028 kb on + strand, within Dsui_2950at 3158.084 kb on - strand, within Dsui_2950at 3158.089 kb on - strandat 3158.152 kb on + strand, within Dsui_2950at 3158.240 kb on + strandat 3158.276 kb on - strandat 3158.284 kb on - strandat 3158.314 kb on + strandat 3158.326 kb on + strandat 3158.532 kb on + strandat 3158.754 kb on + strandat 3158.837 kb on - strand, within Dsui_2951at 3158.971 kb on - strand, within Dsui_2951at 3158.977 kb on + strand, within Dsui_2951at 3159.002 kb on + strand, within Dsui_2951at 3159.020 kb on - strand, within Dsui_2951at 3159.023 kb on + strand, within Dsui_2951at 3159.138 kb on + strand, within Dsui_2951at 3159.153 kb on + strandat 3159.210 kb on + strandat 3159.210 kb on + strandat 3159.218 kb on - strand, within Dsui_2951at 3159.402 kb on + strandat 3159.428 kb on + strand, within Dsui_2951at 3159.442 kb on + strand, within Dsui_2951at 3159.471 kb on + strand, within Dsui_2951at 3159.484 kb on + strand, within Dsui_2951

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,155,499 + Dsui_2949 0.35 +0.4
3,155,616 - Dsui_2949 0.46 +1.6
3,155,852 - -0.1
3,155,910 + Dsui_2949 0.75 +0.9
3,156,078 - +0.9
3,156,111 + +0.6
3,156,116 + +0.9
3,156,160 + -0.2
3,156,160 + -0.3
3,156,168 - +2.2
3,156,181 - +1.2
3,156,251 + -2.0
3,156,499 - +2.2
3,156,539 - +0.6
3,156,601 - Dsui_2950 0.13 -0.4
3,156,607 - +1.8
3,156,626 + Dsui_2950 0.14 -0.2
3,156,627 + Dsui_2950 0.14 -2.7
3,156,770 + Dsui_2950 0.20 +0.2
3,156,801 - +2.2
3,156,882 - +2.2
3,156,945 + +2.2
3,156,945 + Dsui_2950 0.27 +0.1
3,156,953 - Dsui_2950 0.27 +1.5
3,156,991 + Dsui_2950 0.29 -0.3
3,156,991 + +0.2
3,157,021 + Dsui_2950 0.30 +0.4
3,157,028 + Dsui_2950 0.30 +0.7
3,157,076 - +2.2
3,157,182 + Dsui_2950 0.37 -0.5
3,157,279 + Dsui_2950 0.41 +0.6
3,157,448 - Dsui_2950 0.48 -0.3
3,157,515 + Dsui_2950 0.51 +0.5
3,157,636 + Dsui_2950 0.56 +0.1
3,157,644 + Dsui_2950 0.56 +0.8
3,157,893 + Dsui_2950 0.66 +0.0
3,157,901 - Dsui_2950 0.67 +0.1
3,157,905 + +1.5
3,158,028 + Dsui_2950 0.72 +0.5
3,158,084 - Dsui_2950 0.74 +0.6
3,158,089 - +0.6
3,158,152 + Dsui_2950 0.77 +1.1
3,158,240 + +0.6
3,158,276 - +1.2
3,158,284 - +0.6
3,158,314 + +1.6
3,158,326 + -0.6
3,158,532 + +0.2
3,158,754 + -1.0
3,158,837 - Dsui_2951 0.10 -0.3
3,158,971 - Dsui_2951 0.21 -1.6
3,158,977 + Dsui_2951 0.21 -0.5
3,159,002 + Dsui_2951 0.23 +0.3
3,159,020 - Dsui_2951 0.25 -1.3
3,159,023 + Dsui_2951 0.25 -0.8
3,159,138 + Dsui_2951 0.34 +0.2
3,159,153 + -0.6
3,159,210 + +0.6
3,159,210 + +0.2
3,159,218 - Dsui_2951 0.40 -1.1
3,159,402 + -0.8
3,159,428 + Dsui_2951 0.57 -0.4
3,159,442 + Dsui_2951 0.58 -0.2
3,159,471 + Dsui_2951 0.60 +0.2
3,159,484 + Dsui_2951 0.61 +0.7

Or see this region's nucleotide sequence