Strain Fitness in Dechlorosoma suillum PS around Dsui_2944

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2943 and Dsui_2944 are separated by 149 nucleotidesDsui_2944 and Dsui_2945 are separated by 313 nucleotidesDsui_2945 and Dsui_2946 overlap by 1 nucleotides Dsui_2943: Dsui_2943 - ABC-type spermidine/putrescine transport system, ATPase component, at 3,148,752 to 3,149,822 _2943 Dsui_2944: Dsui_2944 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,149,972 to 3,151,684 _2944 Dsui_2945: Dsui_2945 - hypothetical protein, at 3,151,998 to 3,152,486 _2945 Dsui_2946: Dsui_2946 - DNA/RNA helicase, superfamily II, at 3,152,486 to 3,153,916 _2946 Position (kb) 3149 3150 3151 3152Strain fitness (log2 ratio) -1 0 1 2at 3149.019 kb on - strand, within Dsui_2943at 3149.060 kb on - strandat 3149.247 kb on + strand, within Dsui_2943at 3149.326 kb on + strand, within Dsui_2943at 3149.336 kb on + strand, within Dsui_2943at 3149.406 kb on + strand, within Dsui_2943at 3149.462 kb on + strand, within Dsui_2943at 3149.479 kb on + strand, within Dsui_2943at 3149.597 kb on + strand, within Dsui_2943at 3149.635 kb on - strand, within Dsui_2943at 3149.654 kb on + strand, within Dsui_2943at 3149.681 kb on + strand, within Dsui_2943at 3149.689 kb on - strandat 3149.689 kb on - strandat 3149.689 kb on - strandat 3149.730 kb on - strandat 3149.743 kb on + strandat 3149.781 kb on - strandat 3149.968 kb on + strandat 3149.968 kb on + strandat 3150.066 kb on - strandat 3150.124 kb on + strandat 3150.126 kb on - strandat 3150.140 kb on + strandat 3150.239 kb on + strand, within Dsui_2944at 3150.239 kb on + strand, within Dsui_2944at 3150.247 kb on - strandat 3150.277 kb on + strand, within Dsui_2944at 3150.385 kb on + strand, within Dsui_2944at 3150.397 kb on - strand, within Dsui_2944at 3150.438 kb on - strand, within Dsui_2944at 3150.475 kb on + strand, within Dsui_2944at 3150.483 kb on - strand, within Dsui_2944at 3150.541 kb on + strand, within Dsui_2944at 3150.597 kb on - strand, within Dsui_2944at 3150.705 kb on - strand, within Dsui_2944at 3150.721 kb on + strand, within Dsui_2944at 3150.721 kb on + strand, within Dsui_2944at 3150.729 kb on - strand, within Dsui_2944at 3150.798 kb on + strand, within Dsui_2944at 3150.840 kb on + strand, within Dsui_2944at 3150.848 kb on - strand, within Dsui_2944at 3150.848 kb on - strand, within Dsui_2944at 3151.159 kb on + strand, within Dsui_2944at 3151.159 kb on + strand, within Dsui_2944at 3151.160 kb on + strand, within Dsui_2944at 3151.160 kb on + strand, within Dsui_2944at 3151.369 kb on - strand, within Dsui_2944at 3151.557 kb on + strandat 3151.617 kb on - strandat 3151.629 kb on - strandat 3151.786 kb on - strandat 3151.811 kb on + strandat 3151.870 kb on - strandat 3151.907 kb on - strandat 3151.950 kb on - strandat 3151.955 kb on + strandat 3151.963 kb on + strandat 3151.975 kb on + strandat 3151.983 kb on - strandat 3152.125 kb on + strand, within Dsui_2945at 3152.174 kb on - strandat 3152.347 kb on - strandat 3152.353 kb on + strand, within Dsui_2945at 3152.372 kb on + strand, within Dsui_2945at 3152.407 kb on + strand, within Dsui_2945at 3152.408 kb on + strand, within Dsui_2945at 3152.408 kb on + strand, within Dsui_2945at 3152.437 kb on - strandat 3152.658 kb on + strand, within Dsui_2946

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,149,019 - Dsui_2943 0.25 -0.4
3,149,060 - +0.2
3,149,247 + Dsui_2943 0.46 -0.2
3,149,326 + Dsui_2943 0.54 -1.6
3,149,336 + Dsui_2943 0.55 +0.3
3,149,406 + Dsui_2943 0.61 +0.0
3,149,462 + Dsui_2943 0.66 +0.0
3,149,479 + Dsui_2943 0.68 +0.0
3,149,597 + Dsui_2943 0.79 +0.6
3,149,635 - Dsui_2943 0.82 -1.0
3,149,654 + Dsui_2943 0.84 +0.1
3,149,681 + Dsui_2943 0.87 +0.7
3,149,689 - +2.2
3,149,689 - +2.2
3,149,689 - +0.6
3,149,730 - +0.3
3,149,743 + +1.1
3,149,781 - +0.5
3,149,968 + +0.2
3,149,968 + -0.0
3,150,066 - -0.0
3,150,124 + -0.1
3,150,126 - +0.6
3,150,140 + +0.8
3,150,239 + Dsui_2944 0.16 +0.2
3,150,239 + Dsui_2944 0.16 +0.6
3,150,247 - -0.6
3,150,277 + Dsui_2944 0.18 +1.2
3,150,385 + Dsui_2944 0.24 +0.3
3,150,397 - Dsui_2944 0.25 -0.3
3,150,438 - Dsui_2944 0.27 +0.9
3,150,475 + Dsui_2944 0.29 +0.0
3,150,483 - Dsui_2944 0.30 -0.5
3,150,541 + Dsui_2944 0.33 +0.4
3,150,597 - Dsui_2944 0.36 +1.2
3,150,705 - Dsui_2944 0.43 +0.6
3,150,721 + Dsui_2944 0.44 +0.1
3,150,721 + Dsui_2944 0.44 -0.3
3,150,729 - Dsui_2944 0.44 +0.3
3,150,798 + Dsui_2944 0.48 -0.8
3,150,840 + Dsui_2944 0.51 +0.3
3,150,848 - Dsui_2944 0.51 +0.5
3,150,848 - Dsui_2944 0.51 +0.2
3,151,159 + Dsui_2944 0.69 +0.2
3,151,159 + Dsui_2944 0.69 +0.3
3,151,160 + Dsui_2944 0.69 +0.6
3,151,160 + Dsui_2944 0.69 -0.3
3,151,369 - Dsui_2944 0.82 +0.0
3,151,557 + -0.3
3,151,617 - -0.1
3,151,629 - +0.0
3,151,786 - +0.4
3,151,811 + -0.5
3,151,870 - +0.9
3,151,907 - +0.9
3,151,950 - +0.6
3,151,955 + -0.4
3,151,963 + -1.0
3,151,975 + -0.2
3,151,983 - +0.9
3,152,125 + Dsui_2945 0.26 -0.4
3,152,174 - -0.8
3,152,347 - +1.2
3,152,353 + Dsui_2945 0.73 +0.5
3,152,372 + Dsui_2945 0.76 +0.5
3,152,407 + Dsui_2945 0.84 -0.2
3,152,408 + Dsui_2945 0.84 -1.4
3,152,408 + Dsui_2945 0.84 +0.2
3,152,437 - +0.6
3,152,658 + Dsui_2946 0.12 -0.4

Or see this region's nucleotide sequence