Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2943 and Dsui_2944 are separated by 149 nucleotides Dsui_2944 and Dsui_2945 are separated by 313 nucleotides Dsui_2945 and Dsui_2946 overlap by 1 nucleotides
Dsui_2943: Dsui_2943 - ABC-type spermidine/putrescine transport system, ATPase component, at 3,148,752 to 3,149,822
_2943
Dsui_2944: Dsui_2944 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,149,972 to 3,151,684
_2944
Dsui_2945: Dsui_2945 - hypothetical protein, at 3,151,998 to 3,152,486
_2945
Dsui_2946: Dsui_2946 - DNA/RNA helicase, superfamily II, at 3,152,486 to 3,153,916
_2946
Position (kb)
3149
3150
3151
3152 Strain fitness (log2 ratio)
-1
0
1
2 at 3149.019 kb on - strand, within Dsui_2943 at 3149.060 kb on - strand at 3149.247 kb on + strand, within Dsui_2943 at 3149.326 kb on + strand, within Dsui_2943 at 3149.336 kb on + strand, within Dsui_2943 at 3149.406 kb on + strand, within Dsui_2943 at 3149.462 kb on + strand, within Dsui_2943 at 3149.479 kb on + strand, within Dsui_2943 at 3149.597 kb on + strand, within Dsui_2943 at 3149.635 kb on - strand, within Dsui_2943 at 3149.654 kb on + strand, within Dsui_2943 at 3149.681 kb on + strand, within Dsui_2943 at 3149.689 kb on - strand at 3149.689 kb on - strand at 3149.689 kb on - strand at 3149.730 kb on - strand at 3149.743 kb on + strand at 3149.781 kb on - strand at 3149.968 kb on + strand at 3149.968 kb on + strand at 3150.066 kb on - strand at 3150.124 kb on + strand at 3150.126 kb on - strand at 3150.140 kb on + strand at 3150.239 kb on + strand, within Dsui_2944 at 3150.239 kb on + strand, within Dsui_2944 at 3150.247 kb on - strand at 3150.277 kb on + strand, within Dsui_2944 at 3150.385 kb on + strand, within Dsui_2944 at 3150.397 kb on - strand, within Dsui_2944 at 3150.438 kb on - strand, within Dsui_2944 at 3150.475 kb on + strand, within Dsui_2944 at 3150.483 kb on - strand, within Dsui_2944 at 3150.541 kb on + strand, within Dsui_2944 at 3150.597 kb on - strand, within Dsui_2944 at 3150.705 kb on - strand, within Dsui_2944 at 3150.721 kb on + strand, within Dsui_2944 at 3150.721 kb on + strand, within Dsui_2944 at 3150.729 kb on - strand, within Dsui_2944 at 3150.798 kb on + strand, within Dsui_2944 at 3150.840 kb on + strand, within Dsui_2944 at 3150.848 kb on - strand, within Dsui_2944 at 3150.848 kb on - strand, within Dsui_2944 at 3151.159 kb on + strand, within Dsui_2944 at 3151.159 kb on + strand, within Dsui_2944 at 3151.160 kb on + strand, within Dsui_2944 at 3151.160 kb on + strand, within Dsui_2944 at 3151.369 kb on - strand, within Dsui_2944 at 3151.557 kb on + strand at 3151.617 kb on - strand at 3151.629 kb on - strand at 3151.786 kb on - strand at 3151.811 kb on + strand at 3151.870 kb on - strand at 3151.907 kb on - strand at 3151.950 kb on - strand at 3151.955 kb on + strand at 3151.963 kb on + strand at 3151.975 kb on + strand at 3151.983 kb on - strand at 3152.125 kb on + strand, within Dsui_2945 at 3152.174 kb on - strand at 3152.347 kb on - strand at 3152.353 kb on + strand, within Dsui_2945 at 3152.372 kb on + strand, within Dsui_2945 at 3152.407 kb on + strand, within Dsui_2945 at 3152.408 kb on + strand, within Dsui_2945 at 3152.408 kb on + strand, within Dsui_2945 at 3152.437 kb on - strand at 3152.658 kb on + strand, within Dsui_2946
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,149,019 - Dsui_2943 0.25 -0.4 3,149,060 - +0.2 3,149,247 + Dsui_2943 0.46 -0.2 3,149,326 + Dsui_2943 0.54 -1.6 3,149,336 + Dsui_2943 0.55 +0.3 3,149,406 + Dsui_2943 0.61 +0.0 3,149,462 + Dsui_2943 0.66 +0.0 3,149,479 + Dsui_2943 0.68 +0.0 3,149,597 + Dsui_2943 0.79 +0.6 3,149,635 - Dsui_2943 0.82 -1.0 3,149,654 + Dsui_2943 0.84 +0.1 3,149,681 + Dsui_2943 0.87 +0.7 3,149,689 - +2.2 3,149,689 - +2.2 3,149,689 - +0.6 3,149,730 - +0.3 3,149,743 + +1.1 3,149,781 - +0.5 3,149,968 + +0.2 3,149,968 + -0.0 3,150,066 - -0.0 3,150,124 + -0.1 3,150,126 - +0.6 3,150,140 + +0.8 3,150,239 + Dsui_2944 0.16 +0.2 3,150,239 + Dsui_2944 0.16 +0.6 3,150,247 - -0.6 3,150,277 + Dsui_2944 0.18 +1.2 3,150,385 + Dsui_2944 0.24 +0.3 3,150,397 - Dsui_2944 0.25 -0.3 3,150,438 - Dsui_2944 0.27 +0.9 3,150,475 + Dsui_2944 0.29 +0.0 3,150,483 - Dsui_2944 0.30 -0.5 3,150,541 + Dsui_2944 0.33 +0.4 3,150,597 - Dsui_2944 0.36 +1.2 3,150,705 - Dsui_2944 0.43 +0.6 3,150,721 + Dsui_2944 0.44 +0.1 3,150,721 + Dsui_2944 0.44 -0.3 3,150,729 - Dsui_2944 0.44 +0.3 3,150,798 + Dsui_2944 0.48 -0.8 3,150,840 + Dsui_2944 0.51 +0.3 3,150,848 - Dsui_2944 0.51 +0.5 3,150,848 - Dsui_2944 0.51 +0.2 3,151,159 + Dsui_2944 0.69 +0.2 3,151,159 + Dsui_2944 0.69 +0.3 3,151,160 + Dsui_2944 0.69 +0.6 3,151,160 + Dsui_2944 0.69 -0.3 3,151,369 - Dsui_2944 0.82 +0.0 3,151,557 + -0.3 3,151,617 - -0.1 3,151,629 - +0.0 3,151,786 - +0.4 3,151,811 + -0.5 3,151,870 - +0.9 3,151,907 - +0.9 3,151,950 - +0.6 3,151,955 + -0.4 3,151,963 + -1.0 3,151,975 + -0.2 3,151,983 - +0.9 3,152,125 + Dsui_2945 0.26 -0.4 3,152,174 - -0.8 3,152,347 - +1.2 3,152,353 + Dsui_2945 0.73 +0.5 3,152,372 + Dsui_2945 0.76 +0.5 3,152,407 + Dsui_2945 0.84 -0.2 3,152,408 + Dsui_2945 0.84 -1.4 3,152,408 + Dsui_2945 0.84 +0.2 3,152,437 - +0.6 3,152,658 + Dsui_2946 0.12 -0.4
Or see this region's nucleotide sequence