Strain Fitness in Dechlorosoma suillum PS around Dsui_2923

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2922 and Dsui_2923 are separated by 199 nucleotidesDsui_2923 and Dsui_2924 are separated by 12 nucleotides Dsui_2922: Dsui_2922 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 3,123,694 to 3,125,469 _2922 Dsui_2923: Dsui_2923 - esterase/lipase, at 3,125,669 to 3,126,511 _2923 Dsui_2924: Dsui_2924 - hypothetical protein, at 3,126,524 to 3,127,285 _2924 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -1 0 1 2at 3124.812 kb on + strand, within Dsui_2922at 3124.859 kb on + strand, within Dsui_2922at 3124.884 kb on + strand, within Dsui_2922at 3124.947 kb on + strand, within Dsui_2922at 3125.057 kb on - strandat 3125.067 kb on - strandat 3125.441 kb on - strandat 3125.599 kb on + strandat 3125.607 kb on - strandat 3125.808 kb on + strand, within Dsui_2923at 3125.808 kb on + strand, within Dsui_2923at 3125.814 kb on - strandat 3125.816 kb on - strandat 3125.816 kb on - strandat 3125.949 kb on + strand, within Dsui_2923at 3126.057 kb on + strand, within Dsui_2923at 3126.086 kb on + strand, within Dsui_2923at 3126.094 kb on - strandat 3126.097 kb on + strand, within Dsui_2923at 3126.097 kb on + strand, within Dsui_2923at 3126.123 kb on + strand, within Dsui_2923at 3126.201 kb on + strandat 3126.209 kb on - strandat 3126.290 kb on - strand, within Dsui_2923at 3126.341 kb on - strandat 3126.360 kb on + strand, within Dsui_2923at 3126.405 kb on + strand, within Dsui_2923at 3126.411 kb on - strand, within Dsui_2923at 3126.411 kb on - strand, within Dsui_2923at 3126.474 kb on - strandat 3126.494 kb on - strandat 3126.619 kb on - strand, within Dsui_2924at 3126.775 kb on - strandat 3126.942 kb on - strand, within Dsui_2924at 3127.041 kb on + strand, within Dsui_2924

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,124,812 + Dsui_2922 0.63 -0.0
3,124,859 + Dsui_2922 0.66 -0.3
3,124,884 + Dsui_2922 0.67 +0.4
3,124,947 + Dsui_2922 0.71 -0.5
3,125,057 - +0.2
3,125,067 - -0.1
3,125,441 - +2.2
3,125,599 + -0.0
3,125,607 - +2.2
3,125,808 + Dsui_2923 0.16 -0.9
3,125,808 + Dsui_2923 0.16 -0.4
3,125,814 - +0.6
3,125,816 - +2.2
3,125,816 - +1.2
3,125,949 + Dsui_2923 0.33 +0.0
3,126,057 + Dsui_2923 0.46 -0.4
3,126,086 + Dsui_2923 0.49 -0.5
3,126,094 - +0.2
3,126,097 + Dsui_2923 0.51 +0.0
3,126,097 + Dsui_2923 0.51 -1.1
3,126,123 + Dsui_2923 0.54 +0.2
3,126,201 + +2.2
3,126,209 - +1.5
3,126,290 - Dsui_2923 0.74 -1.4
3,126,341 - +0.2
3,126,360 + Dsui_2923 0.82 +0.6
3,126,405 + Dsui_2923 0.87 -0.6
3,126,411 - Dsui_2923 0.88 -0.3
3,126,411 - Dsui_2923 0.88 -0.8
3,126,474 - +0.6
3,126,494 - -0.6
3,126,619 - Dsui_2924 0.12 +1.4
3,126,775 - +1.2
3,126,942 - Dsui_2924 0.55 +0.0
3,127,041 + Dsui_2924 0.68 -0.2

Or see this region's nucleotide sequence