Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2922 and Dsui_2923 are separated by 199 nucleotides Dsui_2923 and Dsui_2924 are separated by 12 nucleotides
Dsui_2922: Dsui_2922 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 3,123,694 to 3,125,469
_2922
Dsui_2923: Dsui_2923 - esterase/lipase, at 3,125,669 to 3,126,511
_2923
Dsui_2924: Dsui_2924 - hypothetical protein, at 3,126,524 to 3,127,285
_2924
Position (kb)
3125
3126
3127 Strain fitness (log2 ratio)
-1
0
1
2 at 3124.812 kb on + strand, within Dsui_2922 at 3124.859 kb on + strand, within Dsui_2922 at 3124.884 kb on + strand, within Dsui_2922 at 3124.947 kb on + strand, within Dsui_2922 at 3125.057 kb on - strand at 3125.067 kb on - strand at 3125.441 kb on - strand at 3125.599 kb on + strand at 3125.607 kb on - strand at 3125.808 kb on + strand, within Dsui_2923 at 3125.808 kb on + strand, within Dsui_2923 at 3125.814 kb on - strand at 3125.816 kb on - strand at 3125.816 kb on - strand at 3125.949 kb on + strand, within Dsui_2923 at 3126.057 kb on + strand, within Dsui_2923 at 3126.086 kb on + strand, within Dsui_2923 at 3126.094 kb on - strand at 3126.097 kb on + strand, within Dsui_2923 at 3126.097 kb on + strand, within Dsui_2923 at 3126.123 kb on + strand, within Dsui_2923 at 3126.201 kb on + strand at 3126.209 kb on - strand at 3126.290 kb on - strand, within Dsui_2923 at 3126.341 kb on - strand at 3126.360 kb on + strand, within Dsui_2923 at 3126.405 kb on + strand, within Dsui_2923 at 3126.411 kb on - strand, within Dsui_2923 at 3126.411 kb on - strand, within Dsui_2923 at 3126.474 kb on - strand at 3126.494 kb on - strand at 3126.619 kb on - strand, within Dsui_2924 at 3126.775 kb on - strand at 3126.942 kb on - strand, within Dsui_2924 at 3127.041 kb on + strand, within Dsui_2924
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,124,812 + Dsui_2922 0.63 -0.0 3,124,859 + Dsui_2922 0.66 -0.3 3,124,884 + Dsui_2922 0.67 +0.4 3,124,947 + Dsui_2922 0.71 -0.5 3,125,057 - +0.2 3,125,067 - -0.1 3,125,441 - +2.2 3,125,599 + -0.0 3,125,607 - +2.2 3,125,808 + Dsui_2923 0.16 -0.9 3,125,808 + Dsui_2923 0.16 -0.4 3,125,814 - +0.6 3,125,816 - +2.2 3,125,816 - +1.2 3,125,949 + Dsui_2923 0.33 +0.0 3,126,057 + Dsui_2923 0.46 -0.4 3,126,086 + Dsui_2923 0.49 -0.5 3,126,094 - +0.2 3,126,097 + Dsui_2923 0.51 +0.0 3,126,097 + Dsui_2923 0.51 -1.1 3,126,123 + Dsui_2923 0.54 +0.2 3,126,201 + +2.2 3,126,209 - +1.5 3,126,290 - Dsui_2923 0.74 -1.4 3,126,341 - +0.2 3,126,360 + Dsui_2923 0.82 +0.6 3,126,405 + Dsui_2923 0.87 -0.6 3,126,411 - Dsui_2923 0.88 -0.3 3,126,411 - Dsui_2923 0.88 -0.8 3,126,474 - +0.6 3,126,494 - -0.6 3,126,619 - Dsui_2924 0.12 +1.4 3,126,775 - +1.2 3,126,942 - Dsui_2924 0.55 +0.0 3,127,041 + Dsui_2924 0.68 -0.2
Or see this region's nucleotide sequence