Strain Fitness in Dechlorosoma suillum PS around Dsui_2796

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2790 and Dsui_2791 are separated by 23 nucleotidesDsui_2791 and Dsui_2792 are separated by 89 nucleotidesDsui_2792 and Dsui_2793 are separated by 232 nucleotidesDsui_2793 and Dsui_2794 are separated by 23 nucleotidesDsui_2794 and Dsui_2795 are separated by 55 nucleotidesDsui_2795 and Dsui_2796 are separated by 77 nucleotidesDsui_2796 and Dsui_2797 are separated by 184 nucleotides Dsui_2790: Dsui_2790 - tRNA-Ala, at 2,963,149 to 2,963,224 _2790 Dsui_2791: Dsui_2791 - tRNA-Glu, at 2,963,248 to 2,963,323 _2791 Dsui_2792: Dsui_2792 - tRNA-Asp, at 2,963,413 to 2,963,489 _2792 Dsui_2793: Dsui_2793 - tRNA-Ala, at 2,963,722 to 2,963,797 _2793 Dsui_2794: Dsui_2794 - tRNA-Glu, at 2,963,821 to 2,963,896 _2794 Dsui_2795: Dsui_2795 - tRNA-Asp, at 2,963,952 to 2,964,028 _2795 Dsui_2796: Dsui_2796 - NAD-dependent protein deacetylase, SIR2 family, at 2,964,106 to 2,964,867 _2796 Dsui_2797: Dsui_2797 - LysM repeat-containing protein, at 2,965,052 to 2,966,869 _2797 Position (kb) 2964 2965Strain fitness (log2 ratio) -1 0 1at 2963.107 kb on - strandat 2963.323 kb on + strandat 2963.360 kb on + strandat 2963.385 kb on + strandat 2963.550 kb on + strandat 2963.550 kb on + strandat 2963.582 kb on + strandat 2963.583 kb on + strandat 2963.631 kb on + strandat 2963.636 kb on + strandat 2963.937 kb on + strandat 2963.937 kb on + strandat 2964.153 kb on + strandat 2964.268 kb on + strand, within Dsui_2796at 2964.280 kb on + strand, within Dsui_2796at 2964.295 kb on - strandat 2964.305 kb on - strand, within Dsui_2796at 2964.407 kb on + strand, within Dsui_2796at 2964.435 kb on + strand, within Dsui_2796at 2964.450 kb on - strandat 2964.464 kb on + strand, within Dsui_2796at 2964.521 kb on + strand, within Dsui_2796at 2964.600 kb on - strand, within Dsui_2796at 2964.651 kb on + strand, within Dsui_2796at 2964.732 kb on + strand, within Dsui_2796at 2964.750 kb on + strand, within Dsui_2796at 2964.758 kb on - strandat 2964.910 kb on - strandat 2964.937 kb on + strandat 2964.976 kb on - strandat 2965.072 kb on + strandat 2965.080 kb on - strandat 2965.180 kb on - strandat 2965.214 kb on - strandat 2965.256 kb on + strand, within Dsui_2797at 2965.447 kb on + strand, within Dsui_2797at 2965.454 kb on + strand, within Dsui_2797at 2965.558 kb on + strand, within Dsui_2797at 2965.584 kb on + strand, within Dsui_2797at 2965.584 kb on + strand, within Dsui_2797at 2965.592 kb on - strand, within Dsui_2797at 2965.649 kb on + strand, within Dsui_2797at 2965.748 kb on + strand, within Dsui_2797

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,963,107 - +0.6
2,963,323 + +0.3
2,963,360 + +0.2
2,963,385 + +0.0
2,963,550 + -0.2
2,963,550 + -0.3
2,963,582 + -0.0
2,963,583 + +0.0
2,963,631 + -1.3
2,963,636 + +0.6
2,963,937 + +0.3
2,963,937 + +0.1
2,964,153 + +0.3
2,964,268 + Dsui_2796 0.21 +0.3
2,964,280 + Dsui_2796 0.23 +0.6
2,964,295 - -0.3
2,964,305 - Dsui_2796 0.26 +1.3
2,964,407 + Dsui_2796 0.40 +0.2
2,964,435 + Dsui_2796 0.43 +0.5
2,964,450 - +0.0
2,964,464 + Dsui_2796 0.47 +0.7
2,964,521 + Dsui_2796 0.54 +0.2
2,964,600 - Dsui_2796 0.65 +0.4
2,964,651 + Dsui_2796 0.72 +0.2
2,964,732 + Dsui_2796 0.82 +1.0
2,964,750 + Dsui_2796 0.85 -0.2
2,964,758 - +1.3
2,964,910 - -0.3
2,964,937 + +0.2
2,964,976 - +0.3
2,965,072 + -0.4
2,965,080 - -0.1
2,965,180 - -0.5
2,965,214 - -0.4
2,965,256 + Dsui_2797 0.11 +0.1
2,965,447 + Dsui_2797 0.22 +0.1
2,965,454 + Dsui_2797 0.22 +0.3
2,965,558 + Dsui_2797 0.28 +0.3
2,965,584 + Dsui_2797 0.29 -0.6
2,965,584 + Dsui_2797 0.29 -0.1
2,965,592 - Dsui_2797 0.30 -0.8
2,965,649 + Dsui_2797 0.33 +0.1
2,965,748 + Dsui_2797 0.38 +0.1

Or see this region's nucleotide sequence