Strain Fitness in Dechlorosoma suillum PS around Dsui_2405

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2403 and Dsui_2404 are separated by 3 nucleotidesDsui_2404 and Dsui_2405 overlap by 4 nucleotidesDsui_2405 and Dsui_2406 are separated by 199 nucleotidesDsui_2406 and Dsui_2407 are separated by 12 nucleotides Dsui_2403: Dsui_2403 - universal bacterial protein YeaZ, at 2,555,662 to 2,556,345 _2403 Dsui_2404: Dsui_2404 - ribosomal-protein-alanine acetyltransferase, at 2,556,349 to 2,556,840 _2404 Dsui_2405: Dsui_2405 - uracil-DNA glycosylase, family 4, at 2,556,837 to 2,557,694 _2405 Dsui_2406: Dsui_2406 - hypothetical protein, at 2,557,894 to 2,558,496 _2406 Dsui_2407: Dsui_2407 - beta-propeller domain-containing protein, methanol dehydrogenase, at 2,558,509 to 2,559,339 _2407 Position (kb) 2556 2557 2558Strain fitness (log2 ratio) -1 0 1 2 3at 2556.354 kb on + strandat 2556.452 kb on + strand, within Dsui_2404at 2556.517 kb on + strand, within Dsui_2404at 2556.709 kb on + strand, within Dsui_2404at 2556.715 kb on + strand, within Dsui_2404at 2556.842 kb on + strandat 2557.699 kb on + strandat 2557.896 kb on - strandat 2557.896 kb on - strandat 2557.938 kb on + strandat 2557.941 kb on - strandat 2557.946 kb on - strandat 2557.976 kb on - strandat 2557.983 kb on + strand, within Dsui_2406at 2557.983 kb on + strand, within Dsui_2406at 2557.983 kb on + strand, within Dsui_2406at 2557.983 kb on + strand, within Dsui_2406at 2557.991 kb on - strandat 2557.991 kb on - strandat 2557.991 kb on - strand, within Dsui_2406at 2558.064 kb on + strand, within Dsui_2406at 2558.067 kb on - strandat 2558.072 kb on - strandat 2558.177 kb on + strand, within Dsui_2406at 2558.195 kb on - strandat 2558.238 kb on + strand, within Dsui_2406at 2558.243 kb on + strand, within Dsui_2406at 2558.288 kb on + strand, within Dsui_2406at 2558.420 kb on - strand, within Dsui_2406at 2558.445 kb on + strandat 2558.448 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,556,354 + +0.5
2,556,452 + Dsui_2404 0.21 +0.4
2,556,517 + Dsui_2404 0.34 +0.1
2,556,709 + Dsui_2404 0.73 +0.7
2,556,715 + Dsui_2404 0.74 +1.7
2,556,842 + +0.8
2,557,699 + +1.3
2,557,896 - +2.3
2,557,896 - -0.5
2,557,938 + +0.3
2,557,941 - +0.7
2,557,946 - +3.3
2,557,976 - +2.3
2,557,983 + Dsui_2406 0.15 +0.1
2,557,983 + Dsui_2406 0.15 +0.1
2,557,983 + Dsui_2406 0.15 -0.3
2,557,983 + Dsui_2406 0.15 +0.8
2,557,991 - -0.3
2,557,991 - +3.3
2,557,991 - Dsui_2406 0.16 -0.0
2,558,064 + Dsui_2406 0.28 +2.0
2,558,067 - +0.7
2,558,072 - +0.7
2,558,177 + Dsui_2406 0.47 +0.1
2,558,195 - +1.3
2,558,238 + Dsui_2406 0.57 -0.6
2,558,243 + Dsui_2406 0.58 +0.2
2,558,288 + Dsui_2406 0.65 -0.5
2,558,420 - Dsui_2406 0.87 -0.0
2,558,445 + +0.2
2,558,448 + +0.1

Or see this region's nucleotide sequence