Strain Fitness in Dechlorosoma suillum PS around Dsui_2220

Experiment: rich media with sodium chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2219 and Dsui_2220 are separated by 199 nucleotidesDsui_2220 and Dsui_2221 are separated by 271 nucleotides Dsui_2219: Dsui_2219 - dihydrolipoamide dehydrogenase, at 2,359,377 to 2,360,801 _2219 Dsui_2220: Dsui_2220 - hypothetical protein, at 2,361,001 to 2,361,321 _2220 Dsui_2221: Dsui_2221 - putative ATPase, at 2,361,593 to 2,362,708 _2221 Position (kb) 2361 2362Strain fitness (log2 ratio) -2 -1 0 1 2at 2360.795 kb on + strandat 2360.795 kb on + strandat 2360.843 kb on + strandat 2360.946 kb on + strandat 2360.951 kb on + strandat 2360.959 kb on - strandat 2360.973 kb on + strandat 2361.024 kb on - strandat 2361.028 kb on - strandat 2361.092 kb on + strand, within Dsui_2220at 2361.136 kb on + strandat 2361.141 kb on - strand, within Dsui_2220at 2361.180 kb on + strandat 2361.180 kb on - strand, within Dsui_2220at 2361.188 kb on - strand, within Dsui_2220at 2361.279 kb on - strand, within Dsui_2220at 2361.377 kb on + strandat 2361.476 kb on + strandat 2361.479 kb on - strandat 2361.484 kb on - strandat 2361.484 kb on - strandat 2361.491 kb on + strandat 2361.538 kb on - strandat 2361.565 kb on + strandat 2361.608 kb on - strandat 2361.680 kb on - strandat 2361.833 kb on - strandat 2361.917 kb on + strand, within Dsui_2221at 2362.164 kb on + strand, within Dsui_2221at 2362.233 kb on + strand, within Dsui_2221at 2362.233 kb on + strand, within Dsui_2221at 2362.302 kb on + strand, within Dsui_2221

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
remove
2,360,795 + -0.5
2,360,795 + -0.2
2,360,843 + -0.3
2,360,946 + -0.3
2,360,951 + +0.7
2,360,959 - -0.8
2,360,973 + +0.8
2,361,024 - -0.5
2,361,028 - -0.1
2,361,092 + Dsui_2220 0.28 -1.2
2,361,136 + +1.3
2,361,141 - Dsui_2220 0.44 +0.5
2,361,180 + +2.3
2,361,180 - Dsui_2220 0.56 +0.3
2,361,188 - Dsui_2220 0.58 -1.8
2,361,279 - Dsui_2220 0.87 -1.9
2,361,377 + -0.0
2,361,476 + +0.7
2,361,479 - +0.1
2,361,484 - +0.3
2,361,484 - -0.7
2,361,491 + +1.1
2,361,538 - -0.2
2,361,565 + -0.2
2,361,608 - +0.1
2,361,680 - +1.3
2,361,833 - -0.3
2,361,917 + Dsui_2221 0.29 -0.3
2,362,164 + Dsui_2221 0.51 +0.3
2,362,233 + Dsui_2221 0.57 -0.1
2,362,233 + Dsui_2221 0.57 -0.3
2,362,302 + Dsui_2221 0.64 -0.4

Or see this region's nucleotide sequence