Strain Fitness in Dechlorosoma suillum PS around Dsui_2187

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2185 and Dsui_2186 are separated by 185 nucleotidesDsui_2186 and Dsui_2187 are separated by 70 nucleotidesDsui_2187 and Dsui_2188 are separated by 320 nucleotidesDsui_2188 and Dsui_2189 are separated by 145 nucleotides Dsui_2185: Dsui_2185 - DNA-3-methyladenine glycosylase I, at 2,320,354 to 2,320,926 _2185 Dsui_2186: Dsui_2186 - Protein of unknown function (DUF3567), at 2,321,112 to 2,321,345 _2186 Dsui_2187: Dsui_2187 - acyl-CoA synthetase/AMP-acid ligase, at 2,321,416 to 2,323,113 _2187 Dsui_2188: Dsui_2188 - Protein of unknown function (DUF3460), at 2,323,434 to 2,323,625 _2188 Dsui_2189: Dsui_2189 - acyl-CoA synthetase (NDP forming), at 2,323,771 to 2,326,461 _2189 Position (kb) 2321 2322 2323 2324Strain fitness (log2 ratio) -1 0 1 2 3at 2320.425 kb on + strand, within Dsui_2185at 2320.477 kb on - strandat 2320.619 kb on - strand, within Dsui_2185at 2320.650 kb on + strandat 2320.697 kb on + strandat 2320.784 kb on + strand, within Dsui_2185at 2320.901 kb on - strandat 2320.978 kb on + strandat 2321.011 kb on + strandat 2321.018 kb on - strandat 2321.045 kb on - strandat 2321.155 kb on + strand, within Dsui_2186at 2321.317 kb on + strand, within Dsui_2186at 2321.353 kb on - strandat 2321.435 kb on - strandat 2321.534 kb on + strandat 2321.542 kb on - strandat 2321.542 kb on - strandat 2321.660 kb on - strandat 2321.833 kb on - strandat 2321.852 kb on + strandat 2322.053 kb on - strand, within Dsui_2187at 2322.108 kb on + strand, within Dsui_2187at 2322.112 kb on - strandat 2322.161 kb on + strand, within Dsui_2187at 2322.361 kb on + strandat 2322.417 kb on + strand, within Dsui_2187at 2322.437 kb on + strand, within Dsui_2187at 2322.463 kb on + strandat 2322.471 kb on - strandat 2322.782 kb on - strandat 2322.804 kb on + strand, within Dsui_2187at 2322.850 kb on - strand, within Dsui_2187at 2322.906 kb on - strandat 2323.017 kb on + strandat 2323.034 kb on + strandat 2323.048 kb on + strandat 2323.096 kb on + strandat 2323.176 kb on - strandat 2323.329 kb on + strandat 2323.431 kb on + strandat 2323.450 kb on - strandat 2323.457 kb on + strand, within Dsui_2188at 2323.547 kb on + strand, within Dsui_2188at 2323.587 kb on + strand, within Dsui_2188at 2323.595 kb on + strand, within Dsui_2188at 2323.619 kb on - strandat 2323.640 kb on + strandat 2323.669 kb on + strandat 2323.669 kb on - strandat 2323.749 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,320,425 + Dsui_2185 0.12 -0.5
2,320,477 - -0.5
2,320,619 - Dsui_2185 0.46 +0.9
2,320,650 + +0.7
2,320,697 + +0.7
2,320,784 + Dsui_2185 0.75 -0.3
2,320,901 - -1.0
2,320,978 + +1.0
2,321,011 + -0.0
2,321,018 - +0.7
2,321,045 - +2.3
2,321,155 + Dsui_2186 0.18 -0.9
2,321,317 + Dsui_2186 0.88 -0.0
2,321,353 - +0.3
2,321,435 - +0.5
2,321,534 + -0.0
2,321,542 - +1.2
2,321,542 - -0.1
2,321,660 - +1.3
2,321,833 - +0.3
2,321,852 + -0.5
2,322,053 - Dsui_2187 0.38 +0.7
2,322,108 + Dsui_2187 0.41 -1.1
2,322,112 - +1.3
2,322,161 + Dsui_2187 0.44 -1.6
2,322,361 + +0.3
2,322,417 + Dsui_2187 0.59 +0.2
2,322,437 + Dsui_2187 0.60 -0.6
2,322,463 + +1.0
2,322,471 - +3.3
2,322,782 - +1.3
2,322,804 + Dsui_2187 0.82 -1.2
2,322,850 - Dsui_2187 0.84 -0.9
2,322,906 - -0.0
2,323,017 + -0.8
2,323,034 + -0.0
2,323,048 + -0.7
2,323,096 + +1.6
2,323,176 - -0.0
2,323,329 + -0.4
2,323,431 + -0.7
2,323,450 - -0.5
2,323,457 + Dsui_2188 0.12 +0.5
2,323,547 + Dsui_2188 0.59 +0.0
2,323,587 + Dsui_2188 0.80 -0.7
2,323,595 + Dsui_2188 0.84 +0.1
2,323,619 - +0.1
2,323,640 + -0.0
2,323,669 + -0.9
2,323,669 - +0.1
2,323,749 + +1.9

Or see this region's nucleotide sequence