Strain Fitness in Dechlorosoma suillum PS around Dsui_2162

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2161 and Dsui_2162 are separated by 133 nucleotidesDsui_2162 and Dsui_2163 are separated by 282 nucleotidesDsui_2163 and Dsui_2164 are separated by 146 nucleotides Dsui_2161: Dsui_2161 - ATP-dependent chaperone ClpB, at 2,294,780 to 2,297,365 _2161 Dsui_2162: Dsui_2162 - hypothetical protein, at 2,297,499 to 2,298,074 _2162 Dsui_2163: Dsui_2163 - putative Fe-S oxidoreductase, at 2,298,357 to 2,298,773 _2163 Dsui_2164: Dsui_2164 - signal transduction histidine kinase, at 2,298,920 to 2,300,968 _2164 Position (kb) 2297 2298 2299Strain fitness (log2 ratio) -2 -1 0 1 2at 2296.514 kb on + strand, within Dsui_2161at 2296.630 kb on + strand, within Dsui_2161at 2296.723 kb on + strand, within Dsui_2161at 2296.736 kb on + strand, within Dsui_2161at 2296.782 kb on - strand, within Dsui_2161at 2296.811 kb on - strandat 2296.853 kb on - strand, within Dsui_2161at 2296.853 kb on - strand, within Dsui_2161at 2296.873 kb on - strand, within Dsui_2161at 2296.897 kb on + strandat 2296.938 kb on + strand, within Dsui_2161at 2296.946 kb on - strand, within Dsui_2161at 2296.991 kb on - strand, within Dsui_2161at 2297.018 kb on + strand, within Dsui_2161at 2297.077 kb on - strand, within Dsui_2161at 2297.149 kb on + strandat 2297.213 kb on - strandat 2297.354 kb on + strandat 2297.359 kb on + strandat 2297.411 kb on - strandat 2297.417 kb on - strandat 2297.440 kb on + strandat 2297.538 kb on - strandat 2297.553 kb on + strandat 2297.617 kb on + strand, within Dsui_2162at 2297.622 kb on + strand, within Dsui_2162at 2297.622 kb on + strand, within Dsui_2162at 2297.628 kb on + strand, within Dsui_2162at 2297.641 kb on - strand, within Dsui_2162at 2297.712 kb on + strand, within Dsui_2162at 2297.712 kb on + strand, within Dsui_2162at 2297.777 kb on - strand, within Dsui_2162at 2297.777 kb on - strand, within Dsui_2162at 2297.839 kb on - strand, within Dsui_2162at 2297.902 kb on + strand, within Dsui_2162at 2297.902 kb on + strand, within Dsui_2162at 2297.910 kb on - strand, within Dsui_2162at 2297.910 kb on - strand, within Dsui_2162at 2297.975 kb on - strandat 2298.093 kb on + strandat 2298.144 kb on + strandat 2298.144 kb on + strandat 2298.147 kb on - strandat 2298.147 kb on - strandat 2298.151 kb on + strandat 2298.206 kb on + strandat 2298.342 kb on + strandat 2298.360 kb on + strandat 2298.488 kb on - strand, within Dsui_2163at 2298.494 kb on + strand, within Dsui_2163at 2298.524 kb on - strandat 2298.716 kb on + strand, within Dsui_2163at 2298.771 kb on - strandat 2298.819 kb on - strandat 2298.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,296,514 + Dsui_2161 0.67 +0.2
2,296,630 + Dsui_2161 0.72 -0.2
2,296,723 + Dsui_2161 0.75 +0.4
2,296,736 + Dsui_2161 0.76 -0.1
2,296,782 - Dsui_2161 0.77 +0.3
2,296,811 - +0.0
2,296,853 - Dsui_2161 0.80 +0.7
2,296,853 - Dsui_2161 0.80 +0.5
2,296,873 - Dsui_2161 0.81 -0.8
2,296,897 + +1.7
2,296,938 + Dsui_2161 0.83 +0.6
2,296,946 - Dsui_2161 0.84 -1.8
2,296,991 - Dsui_2161 0.85 -0.8
2,297,018 + Dsui_2161 0.87 +0.4
2,297,077 - Dsui_2161 0.89 -1.1
2,297,149 + +0.6
2,297,213 - +0.0
2,297,354 + +0.4
2,297,359 + +0.1
2,297,411 - +0.4
2,297,417 - +0.2
2,297,440 + -0.7
2,297,538 - +0.9
2,297,553 + +0.3
2,297,617 + Dsui_2162 0.20 -0.8
2,297,622 + Dsui_2162 0.21 -0.0
2,297,622 + Dsui_2162 0.21 -0.4
2,297,628 + Dsui_2162 0.22 +0.5
2,297,641 - Dsui_2162 0.25 +0.1
2,297,712 + Dsui_2162 0.37 -0.4
2,297,712 + Dsui_2162 0.37 -0.8
2,297,777 - Dsui_2162 0.48 +1.1
2,297,777 - Dsui_2162 0.48 -2.0
2,297,839 - Dsui_2162 0.59 -1.2
2,297,902 + Dsui_2162 0.70 -1.0
2,297,902 + Dsui_2162 0.70 -0.4
2,297,910 - Dsui_2162 0.71 -0.2
2,297,910 - Dsui_2162 0.71 -1.5
2,297,975 - -0.5
2,298,093 + -1.3
2,298,144 + +1.0
2,298,144 + +0.7
2,298,147 - +0.2
2,298,147 - +0.5
2,298,151 + +2.3
2,298,206 + +1.3
2,298,342 + +0.7
2,298,360 + -0.1
2,298,488 - Dsui_2163 0.31 +1.3
2,298,494 + Dsui_2163 0.33 +1.6
2,298,524 - +0.7
2,298,716 + Dsui_2163 0.86 -0.7
2,298,771 - +0.7
2,298,819 - -1.0
2,298,964 + +1.0

Or see this region's nucleotide sequence