Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2122 and Dsui_2123 are separated by 135 nucleotides Dsui_2123 and Dsui_2124 are separated by 326 nucleotides
Dsui_2122: Dsui_2122 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 2,247,724 to 2,248,770
_2122
Dsui_2123: Dsui_2123 - EAL domain-containing protein, at 2,248,906 to 2,249,853
_2123
Dsui_2124: Dsui_2124 - methyl-accepting chemotaxis protein, at 2,250,180 to 2,251,283
_2124
Position (kb)
2248
2249
2250 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2247.920 kb on - strand, within Dsui_2122 at 2247.930 kb on + strand, within Dsui_2122 at 2247.930 kb on + strand, within Dsui_2122 at 2247.938 kb on - strand at 2248.018 kb on + strand at 2248.033 kb on + strand at 2248.040 kb on + strand, within Dsui_2122 at 2248.130 kb on + strand, within Dsui_2122 at 2248.138 kb on - strand, within Dsui_2122 at 2248.166 kb on - strand at 2248.201 kb on + strand, within Dsui_2122 at 2248.209 kb on - strand, within Dsui_2122 at 2248.219 kb on - strand at 2248.235 kb on + strand, within Dsui_2122 at 2248.278 kb on - strand at 2248.303 kb on - strand at 2248.412 kb on - strand, within Dsui_2122 at 2248.483 kb on - strand at 2248.508 kb on + strand, within Dsui_2122 at 2248.651 kb on - strand at 2248.670 kb on - strand at 2249.022 kb on + strand at 2249.159 kb on - strand at 2249.245 kb on + strand at 2249.258 kb on - strand, within Dsui_2123 at 2249.351 kb on + strand at 2249.507 kb on - strand, within Dsui_2123 at 2249.601 kb on - strand at 2249.664 kb on - strand, within Dsui_2123 at 2249.774 kb on - strand at 2249.931 kb on - strand at 2250.257 kb on + strand at 2250.333 kb on + strand at 2250.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 2,247,920 - Dsui_2122 0.19 +0.3 2,247,930 + Dsui_2122 0.20 +0.9 2,247,930 + Dsui_2122 0.20 +0.5 2,247,938 - +1.6 2,248,018 + -0.3 2,248,033 + +1.3 2,248,040 + Dsui_2122 0.30 -0.8 2,248,130 + Dsui_2122 0.39 +0.5 2,248,138 - Dsui_2122 0.40 -0.6 2,248,166 - +2.3 2,248,201 + Dsui_2122 0.46 +0.7 2,248,209 - Dsui_2122 0.46 -0.1 2,248,219 - +1.3 2,248,235 + Dsui_2122 0.49 +0.2 2,248,278 - +3.3 2,248,303 - +2.3 2,248,412 - Dsui_2122 0.66 -0.5 2,248,483 - +0.7 2,248,508 + Dsui_2122 0.75 -0.3 2,248,651 - +1.7 2,248,670 - +1.3 2,249,022 + +0.3 2,249,159 - +0.3 2,249,245 + +0.0 2,249,258 - Dsui_2123 0.37 +0.0 2,249,351 + -0.3 2,249,507 - Dsui_2123 0.63 -0.5 2,249,601 - +1.7 2,249,664 - Dsui_2123 0.80 -0.8 2,249,774 - -0.5 2,249,931 - +0.0 2,250,257 + +1.0 2,250,333 + +2.3 2,250,761 + +2.3
Or see this region's nucleotide sequence