Strain Fitness in Dechlorosoma suillum PS around Dsui_1656

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1654 and Dsui_1655 overlap by 25 nucleotidesDsui_1655 and Dsui_1656 are separated by 10 nucleotidesDsui_1656 and Dsui_1657 are separated by 9 nucleotides Dsui_1654: Dsui_1654 - hypothetical protein, at 1,736,672 to 1,738,099 _1654 Dsui_1655: Dsui_1655 - high-affinity Fe2+/Pb2+ permease, at 1,738,075 to 1,738,932 _1655 Dsui_1656: Dsui_1656 - hypothetical protein, at 1,738,943 to 1,739,290 _1656 Dsui_1657: Dsui_1657 - carbohydrate-selective porin, at 1,739,300 to 1,740,850 _1657 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -2 -1 0 1at 1738.123 kb on - strandat 1738.123 kb on - strandat 1738.130 kb on - strandat 1738.173 kb on - strand, within Dsui_1655at 1738.178 kb on - strand, within Dsui_1655at 1738.180 kb on - strand, within Dsui_1655at 1738.228 kb on - strand, within Dsui_1655at 1738.263 kb on + strand, within Dsui_1655at 1738.273 kb on + strand, within Dsui_1655at 1738.313 kb on - strand, within Dsui_1655at 1738.464 kb on - strand, within Dsui_1655at 1738.495 kb on + strand, within Dsui_1655at 1738.522 kb on + strand, within Dsui_1655at 1738.524 kb on - strand, within Dsui_1655at 1738.730 kb on - strand, within Dsui_1655at 1738.742 kb on + strand, within Dsui_1655at 1738.779 kb on - strand, within Dsui_1655at 1738.838 kb on - strand, within Dsui_1655at 1738.864 kb on - strandat 1738.934 kb on + strandat 1738.935 kb on - strandat 1738.977 kb on + strandat 1738.987 kb on + strandat 1739.059 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.157 kb on - strand, within Dsui_1656at 1739.340 kb on + strandat 1739.368 kb on + strandat 1739.391 kb on - strandat 1739.554 kb on + strandat 1739.855 kb on + strand, within Dsui_1657at 1739.909 kb on + strand, within Dsui_1657at 1739.917 kb on - strand, within Dsui_1657at 1740.182 kb on - strand, within Dsui_1657at 1740.274 kb on + strand, within Dsui_1657

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,738,123 - +0.2
1,738,123 - +0.5
1,738,130 - +1.2
1,738,173 - Dsui_1655 0.11 -0.0
1,738,178 - Dsui_1655 0.12 +0.4
1,738,180 - Dsui_1655 0.12 -0.2
1,738,228 - Dsui_1655 0.18 +0.7
1,738,263 + Dsui_1655 0.22 +0.1
1,738,273 + Dsui_1655 0.23 -0.7
1,738,313 - Dsui_1655 0.28 -0.0
1,738,464 - Dsui_1655 0.45 +1.1
1,738,495 + Dsui_1655 0.49 +1.1
1,738,522 + Dsui_1655 0.52 +0.7
1,738,524 - Dsui_1655 0.52 +1.7
1,738,730 - Dsui_1655 0.76 -0.4
1,738,742 + Dsui_1655 0.78 +1.0
1,738,779 - Dsui_1655 0.82 -0.3
1,738,838 - Dsui_1655 0.89 +0.1
1,738,864 - +1.3
1,738,934 + +0.7
1,738,935 - -0.1
1,738,977 + -2.0
1,738,987 + -0.0
1,739,059 - Dsui_1656 0.33 -0.2
1,739,100 - Dsui_1656 0.45 +0.3
1,739,100 - Dsui_1656 0.45 +0.3
1,739,100 - Dsui_1656 0.45 +0.1
1,739,157 - Dsui_1656 0.61 +0.9
1,739,340 + -0.1
1,739,368 + +0.7
1,739,391 - -1.7
1,739,554 + +1.7
1,739,855 + Dsui_1657 0.36 +0.2
1,739,909 + Dsui_1657 0.39 +0.3
1,739,917 - Dsui_1657 0.40 +0.3
1,740,182 - Dsui_1657 0.57 +0.5
1,740,274 + Dsui_1657 0.63 +1.7

Or see this region's nucleotide sequence