Strain Fitness in Dechlorosoma suillum PS around Dsui_1655

Experiment: rich media with sodium chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1654 and Dsui_1655 overlap by 25 nucleotidesDsui_1655 and Dsui_1656 are separated by 10 nucleotidesDsui_1656 and Dsui_1657 are separated by 9 nucleotides Dsui_1654: Dsui_1654 - hypothetical protein, at 1,736,672 to 1,738,099 _1654 Dsui_1655: Dsui_1655 - high-affinity Fe2+/Pb2+ permease, at 1,738,075 to 1,738,932 _1655 Dsui_1656: Dsui_1656 - hypothetical protein, at 1,738,943 to 1,739,290 _1656 Dsui_1657: Dsui_1657 - carbohydrate-selective porin, at 1,739,300 to 1,740,850 _1657 Position (kb) 1738 1739Strain fitness (log2 ratio) -2 -1 0 1 2at 1737.097 kb on + strand, within Dsui_1654at 1737.097 kb on + strand, within Dsui_1654at 1737.103 kb on + strand, within Dsui_1654at 1737.156 kb on - strand, within Dsui_1654at 1737.279 kb on + strand, within Dsui_1654at 1737.289 kb on + strand, within Dsui_1654at 1737.335 kb on + strand, within Dsui_1654at 1737.435 kb on + strand, within Dsui_1654at 1737.493 kb on - strand, within Dsui_1654at 1737.506 kb on - strand, within Dsui_1654at 1737.533 kb on + strand, within Dsui_1654at 1737.546 kb on + strand, within Dsui_1654at 1737.563 kb on - strand, within Dsui_1654at 1737.580 kb on - strand, within Dsui_1654at 1737.635 kb on - strand, within Dsui_1654at 1737.635 kb on - strand, within Dsui_1654at 1737.710 kb on - strand, within Dsui_1654at 1737.738 kb on - strand, within Dsui_1654at 1737.797 kb on - strand, within Dsui_1654at 1738.123 kb on - strandat 1738.123 kb on - strandat 1738.130 kb on - strandat 1738.173 kb on - strand, within Dsui_1655at 1738.178 kb on - strand, within Dsui_1655at 1738.180 kb on - strand, within Dsui_1655at 1738.228 kb on - strand, within Dsui_1655at 1738.263 kb on + strand, within Dsui_1655at 1738.273 kb on + strand, within Dsui_1655at 1738.313 kb on - strand, within Dsui_1655at 1738.464 kb on - strand, within Dsui_1655at 1738.495 kb on + strand, within Dsui_1655at 1738.522 kb on + strand, within Dsui_1655at 1738.524 kb on - strand, within Dsui_1655at 1738.730 kb on - strand, within Dsui_1655at 1738.742 kb on + strand, within Dsui_1655at 1738.779 kb on - strand, within Dsui_1655at 1738.838 kb on - strand, within Dsui_1655at 1738.864 kb on - strandat 1738.934 kb on + strandat 1738.935 kb on - strandat 1738.977 kb on + strandat 1738.987 kb on + strandat 1739.059 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.157 kb on - strand, within Dsui_1656at 1739.340 kb on + strandat 1739.368 kb on + strandat 1739.391 kb on - strandat 1739.554 kb on + strandat 1739.855 kb on + strand, within Dsui_1657at 1739.909 kb on + strand, within Dsui_1657at 1739.917 kb on - strand, within Dsui_1657

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
remove
1,737,097 + Dsui_1654 0.30 +0.5
1,737,097 + Dsui_1654 0.30 +1.3
1,737,103 + Dsui_1654 0.30 +0.8
1,737,156 - Dsui_1654 0.34 +0.6
1,737,279 + Dsui_1654 0.43 -1.0
1,737,289 + Dsui_1654 0.43 +0.1
1,737,335 + Dsui_1654 0.46 -1.6
1,737,435 + Dsui_1654 0.53 -0.1
1,737,493 - Dsui_1654 0.57 +0.3
1,737,506 - Dsui_1654 0.58 +0.4
1,737,533 + Dsui_1654 0.60 -1.5
1,737,546 + Dsui_1654 0.61 +0.7
1,737,563 - Dsui_1654 0.62 -0.0
1,737,580 - Dsui_1654 0.64 +0.7
1,737,635 - Dsui_1654 0.67 +0.4
1,737,635 - Dsui_1654 0.67 +0.1
1,737,710 - Dsui_1654 0.73 +0.3
1,737,738 - Dsui_1654 0.75 +2.3
1,737,797 - Dsui_1654 0.79 -0.3
1,738,123 - +0.2
1,738,123 - +0.5
1,738,130 - +1.2
1,738,173 - Dsui_1655 0.11 -0.0
1,738,178 - Dsui_1655 0.12 +0.4
1,738,180 - Dsui_1655 0.12 -0.2
1,738,228 - Dsui_1655 0.18 +0.7
1,738,263 + Dsui_1655 0.22 +0.1
1,738,273 + Dsui_1655 0.23 -0.7
1,738,313 - Dsui_1655 0.28 -0.0
1,738,464 - Dsui_1655 0.45 +1.1
1,738,495 + Dsui_1655 0.49 +1.1
1,738,522 + Dsui_1655 0.52 +0.7
1,738,524 - Dsui_1655 0.52 +1.7
1,738,730 - Dsui_1655 0.76 -0.4
1,738,742 + Dsui_1655 0.78 +1.0
1,738,779 - Dsui_1655 0.82 -0.3
1,738,838 - Dsui_1655 0.89 +0.1
1,738,864 - +1.3
1,738,934 + +0.7
1,738,935 - -0.1
1,738,977 + -2.0
1,738,987 + -0.0
1,739,059 - Dsui_1656 0.33 -0.2
1,739,100 - Dsui_1656 0.45 +0.3
1,739,100 - Dsui_1656 0.45 +0.3
1,739,100 - Dsui_1656 0.45 +0.1
1,739,157 - Dsui_1656 0.61 +0.9
1,739,340 + -0.1
1,739,368 + +0.7
1,739,391 - -1.7
1,739,554 + +1.7
1,739,855 + Dsui_1657 0.36 +0.2
1,739,909 + Dsui_1657 0.39 +0.3
1,739,917 - Dsui_1657 0.40 +0.3

Or see this region's nucleotide sequence