Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1330 and Dsui_1331 are separated by 9 nucleotides Dsui_1331 and Dsui_1332 are separated by 182 nucleotides Dsui_1332 and Dsui_1333 are separated by 20 nucleotides Dsui_1333 and Dsui_1334 are separated by 44 nucleotides Dsui_1334 and Dsui_1335 are separated by 69 nucleotides
Dsui_1330: Dsui_1330 - ribosomal protein L13, bacterial type, at 1,388,948 to 1,389,376
_1330
Dsui_1331: Dsui_1331 - ribosomal protein S9, at 1,389,386 to 1,389,778
_1331
Dsui_1332: Dsui_1332 - hypothetical protein, at 1,389,961 to 1,390,722
_1332
Dsui_1333: Dsui_1333 - Integral membrane protein CcmA involved in cell shape determination, at 1,390,743 to 1,391,153
_1333
Dsui_1334: Dsui_1334 - Iron-sulfur cluster assembly accessory protein, at 1,391,198 to 1,391,545
_1334
Dsui_1335: Dsui_1335 - metalloendopeptidase-like membrane protein, at 1,391,615 to 1,392,967
_1335
Position (kb)
1389
1390
1391 Strain fitness (log2 ratio)
-2
-1
0
1 at 1389.772 kb on + strand at 1389.787 kb on + strand at 1389.849 kb on - strand at 1389.854 kb on - strand at 1389.855 kb on - strand at 1389.871 kb on + strand at 1389.879 kb on - strand at 1389.888 kb on + strand at 1389.936 kb on + strand at 1389.936 kb on + strand at 1389.944 kb on - strand at 1389.958 kb on + strand at 1389.958 kb on + strand at 1390.013 kb on + strand at 1390.043 kb on + strand, within Dsui_1332 at 1390.118 kb on + strand, within Dsui_1332 at 1390.124 kb on - strand, within Dsui_1332 at 1390.124 kb on - strand, within Dsui_1332 at 1390.125 kb on - strand, within Dsui_1332 at 1390.191 kb on - strand, within Dsui_1332 at 1390.213 kb on + strand, within Dsui_1332 at 1390.225 kb on - strand, within Dsui_1332 at 1390.233 kb on + strand, within Dsui_1332 at 1390.261 kb on - strand, within Dsui_1332 at 1390.293 kb on + strand, within Dsui_1332 at 1390.293 kb on + strand, within Dsui_1332 at 1390.301 kb on - strand, within Dsui_1332 at 1390.306 kb on - strand, within Dsui_1332 at 1390.315 kb on - strand, within Dsui_1332 at 1390.326 kb on - strand, within Dsui_1332 at 1390.358 kb on + strand, within Dsui_1332 at 1390.358 kb on + strand, within Dsui_1332 at 1390.359 kb on + strand, within Dsui_1332 at 1390.360 kb on - strand, within Dsui_1332 at 1390.366 kb on - strand, within Dsui_1332 at 1390.370 kb on + strand, within Dsui_1332 at 1390.370 kb on + strand, within Dsui_1332 at 1390.371 kb on + strand, within Dsui_1332 at 1390.377 kb on - strand, within Dsui_1332 at 1390.378 kb on - strand, within Dsui_1332 at 1390.378 kb on - strand, within Dsui_1332 at 1390.378 kb on - strand, within Dsui_1332 at 1390.399 kb on - strand, within Dsui_1332 at 1390.420 kb on - strand, within Dsui_1332 at 1390.427 kb on + strand, within Dsui_1332 at 1390.470 kb on + strand, within Dsui_1332 at 1390.478 kb on - strand, within Dsui_1332 at 1390.481 kb on + strand, within Dsui_1332 at 1390.481 kb on + strand, within Dsui_1332 at 1390.489 kb on - strand, within Dsui_1332 at 1390.491 kb on + strand, within Dsui_1332 at 1390.499 kb on - strand, within Dsui_1332 at 1390.509 kb on + strand, within Dsui_1332 at 1390.514 kb on + strand, within Dsui_1332 at 1390.515 kb on + strand, within Dsui_1332 at 1390.515 kb on + strand, within Dsui_1332 at 1390.515 kb on + strand, within Dsui_1332 at 1390.523 kb on - strand, within Dsui_1332 at 1390.523 kb on - strand, within Dsui_1332 at 1390.523 kb on - strand, within Dsui_1332 at 1390.569 kb on - strand, within Dsui_1332 at 1390.619 kb on - strand, within Dsui_1332 at 1390.646 kb on - strand at 1390.651 kb on + strand at 1390.654 kb on - strand at 1390.659 kb on - strand at 1390.659 kb on - strand at 1390.659 kb on - strand at 1390.661 kb on + strand at 1390.661 kb on + strand at 1390.661 kb on + strand at 1390.661 kb on + strand at 1390.661 kb on - strand at 1390.668 kb on + strand at 1390.669 kb on - strand at 1390.683 kb on + strand at 1390.725 kb on + strand at 1390.737 kb on + strand at 1390.745 kb on - strand at 1390.760 kb on + strand at 1390.776 kb on + strand at 1390.776 kb on + strand at 1390.776 kb on + strand at 1390.776 kb on + strand at 1390.776 kb on + strand at 1390.777 kb on - strand at 1390.784 kb on - strand, within Dsui_1333 at 1390.784 kb on - strand, within Dsui_1333 at 1390.784 kb on - strand, within Dsui_1333 at 1390.784 kb on - strand, within Dsui_1333 at 1390.784 kb on - strand, within Dsui_1333 at 1390.784 kb on - strand, within Dsui_1333 at 1390.784 kb on - strand, within Dsui_1333 at 1390.825 kb on - strand, within Dsui_1333 at 1390.830 kb on + strand, within Dsui_1333 at 1390.833 kb on - strand, within Dsui_1333 at 1390.835 kb on + strand, within Dsui_1333 at 1390.835 kb on + strand, within Dsui_1333 at 1390.835 kb on + strand, within Dsui_1333 at 1390.835 kb on + strand, within Dsui_1333 at 1390.835 kb on + strand, within Dsui_1333 at 1390.838 kb on - strand, within Dsui_1333 at 1390.838 kb on - strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.840 kb on + strand, within Dsui_1333 at 1390.843 kb on - strand, within Dsui_1333 at 1390.843 kb on - strand, within Dsui_1333 at 1390.843 kb on - strand, within Dsui_1333 at 1390.843 kb on - strand, within Dsui_1333 at 1390.843 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.848 kb on - strand, within Dsui_1333 at 1390.855 kb on - strand, within Dsui_1333 at 1390.885 kb on - strand, within Dsui_1333 at 1390.887 kb on + strand, within Dsui_1333 at 1390.887 kb on + strand, within Dsui_1333 at 1390.906 kb on + strand, within Dsui_1333 at 1390.906 kb on + strand, within Dsui_1333 at 1390.906 kb on + strand, within Dsui_1333 at 1390.906 kb on + strand, within Dsui_1333 at 1390.914 kb on - strand, within Dsui_1333 at 1390.914 kb on - strand, within Dsui_1333 at 1390.914 kb on - strand, within Dsui_1333 at 1390.914 kb on - strand, within Dsui_1333 at 1390.939 kb on - strand, within Dsui_1333 at 1390.943 kb on + strand, within Dsui_1333 at 1390.951 kb on - strand, within Dsui_1333 at 1390.958 kb on + strand, within Dsui_1333 at 1390.966 kb on - strand, within Dsui_1333 at 1390.977 kb on - strand, within Dsui_1333 at 1390.983 kb on + strand, within Dsui_1333 at 1390.985 kb on - strand, within Dsui_1333 at 1390.992 kb on - strand, within Dsui_1333 at 1391.001 kb on - strand, within Dsui_1333 at 1391.005 kb on + strand, within Dsui_1333 at 1391.013 kb on - strand, within Dsui_1333 at 1391.021 kb on - strand, within Dsui_1333 at 1391.023 kb on + strand, within Dsui_1333 at 1391.023 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.030 kb on + strand, within Dsui_1333 at 1391.038 kb on - strand, within Dsui_1333 at 1391.038 kb on - strand, within Dsui_1333 at 1391.038 kb on - strand, within Dsui_1333 at 1391.046 kb on + strand, within Dsui_1333 at 1391.048 kb on + strand, within Dsui_1333 at 1391.048 kb on - strand, within Dsui_1333 at 1391.056 kb on + strand, within Dsui_1333 at 1391.064 kb on - strand, within Dsui_1333 at 1391.064 kb on - strand, within Dsui_1333 at 1391.064 kb on - strand, within Dsui_1333 at 1391.074 kb on + strand, within Dsui_1333 at 1391.081 kb on + strand, within Dsui_1333 at 1391.082 kb on + strand, within Dsui_1333 at 1391.082 kb on - strand, within Dsui_1333 at 1391.082 kb on - strand, within Dsui_1333 at 1391.082 kb on - strand, within Dsui_1333 at 1391.084 kb on - strand, within Dsui_1333 at 1391.090 kb on - strand, within Dsui_1333 at 1391.090 kb on - strand, within Dsui_1333 at 1391.094 kb on - strand, within Dsui_1333 at 1391.119 kb on - strand at 1391.149 kb on + strand at 1391.154 kb on + strand at 1391.162 kb on - strand at 1391.557 kb on - strand at 1391.610 kb on - strand at 1391.612 kb on + strand at 1391.619 kb on - strand at 1391.620 kb on + strand at 1391.620 kb on - strand at 1391.628 kb on - strand at 1391.628 kb on - strand at 1391.679 kb on - strand at 1391.681 kb on + strand at 1391.709 kb on + strand at 1391.709 kb on + strand at 1391.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 1,389,772 + -0.5 1,389,787 + -0.1 1,389,849 - -0.4 1,389,854 - -0.4 1,389,855 - -0.2 1,389,871 + -0.3 1,389,879 - +0.4 1,389,888 + -0.4 1,389,936 + -0.2 1,389,936 + -0.3 1,389,944 - -0.3 1,389,958 + -0.4 1,389,958 + -0.3 1,390,013 + +0.1 1,390,043 + Dsui_1332 0.11 -0.4 1,390,118 + Dsui_1332 0.21 -1.0 1,390,124 - Dsui_1332 0.21 -0.2 1,390,124 - Dsui_1332 0.21 -0.2 1,390,125 - Dsui_1332 0.22 -0.1 1,390,191 - Dsui_1332 0.30 -0.3 1,390,213 + Dsui_1332 0.33 -0.2 1,390,225 - Dsui_1332 0.35 -0.4 1,390,233 + Dsui_1332 0.36 -0.1 1,390,261 - Dsui_1332 0.39 -0.5 1,390,293 + Dsui_1332 0.44 -0.4 1,390,293 + Dsui_1332 0.44 -0.6 1,390,301 - Dsui_1332 0.45 +0.1 1,390,306 - Dsui_1332 0.45 -0.3 1,390,315 - Dsui_1332 0.46 -2.2 1,390,326 - Dsui_1332 0.48 -0.2 1,390,358 + Dsui_1332 0.52 -0.9 1,390,358 + Dsui_1332 0.52 -1.2 1,390,359 + Dsui_1332 0.52 -0.2 1,390,360 - Dsui_1332 0.52 -0.5 1,390,366 - Dsui_1332 0.53 +0.7 1,390,370 + Dsui_1332 0.54 -0.1 1,390,370 + Dsui_1332 0.54 +0.0 1,390,371 + Dsui_1332 0.54 -0.4 1,390,377 - Dsui_1332 0.55 -0.3 1,390,378 - Dsui_1332 0.55 -1.0 1,390,378 - Dsui_1332 0.55 -0.4 1,390,378 - Dsui_1332 0.55 -0.3 1,390,399 - Dsui_1332 0.57 -0.2 1,390,420 - Dsui_1332 0.60 +0.0 1,390,427 + Dsui_1332 0.61 -0.4 1,390,470 + Dsui_1332 0.67 -0.4 1,390,478 - Dsui_1332 0.68 -1.1 1,390,481 + Dsui_1332 0.68 -0.5 1,390,481 + Dsui_1332 0.68 -0.3 1,390,489 - Dsui_1332 0.69 -0.4 1,390,491 + Dsui_1332 0.70 -1.5 1,390,499 - Dsui_1332 0.71 -0.9 1,390,509 + Dsui_1332 0.72 -0.4 1,390,514 + Dsui_1332 0.73 -0.1 1,390,515 + Dsui_1332 0.73 -0.1 1,390,515 + Dsui_1332 0.73 -0.0 1,390,515 + Dsui_1332 0.73 -0.7 1,390,523 - Dsui_1332 0.74 -0.5 1,390,523 - Dsui_1332 0.74 -0.7 1,390,523 - Dsui_1332 0.74 -0.6 1,390,569 - Dsui_1332 0.80 -0.2 1,390,619 - Dsui_1332 0.86 -0.1 1,390,646 - -0.5 1,390,651 + -0.3 1,390,654 - -0.7 1,390,659 - -0.3 1,390,659 - +0.2 1,390,659 - -0.2 1,390,661 + -0.0 1,390,661 + -0.5 1,390,661 + -0.4 1,390,661 + -0.2 1,390,661 - +0.2 1,390,668 + -0.2 1,390,669 - -0.4 1,390,683 + -0.2 1,390,725 + -0.4 1,390,737 + -0.2 1,390,745 - -0.3 1,390,760 + -0.5 1,390,776 + -0.2 1,390,776 + -0.2 1,390,776 + -0.5 1,390,776 + -0.2 1,390,776 + -0.2 1,390,777 - -0.5 1,390,784 - Dsui_1333 0.10 -0.1 1,390,784 - Dsui_1333 0.10 -0.4 1,390,784 - Dsui_1333 0.10 -0.8 1,390,784 - Dsui_1333 0.10 -1.4 1,390,784 - Dsui_1333 0.10 -1.6 1,390,784 - Dsui_1333 0.10 +0.4 1,390,784 - Dsui_1333 0.10 -0.4 1,390,825 - Dsui_1333 0.20 -0.4 1,390,830 + Dsui_1333 0.21 -0.6 1,390,833 - Dsui_1333 0.22 -0.3 1,390,835 + Dsui_1333 0.22 -0.2 1,390,835 + Dsui_1333 0.22 -0.2 1,390,835 + Dsui_1333 0.22 -0.3 1,390,835 + Dsui_1333 0.22 -0.3 1,390,835 + Dsui_1333 0.22 -0.4 1,390,838 - Dsui_1333 0.23 +1.3 1,390,838 - Dsui_1333 0.23 -1.8 1,390,840 + Dsui_1333 0.24 -0.1 1,390,840 + Dsui_1333 0.24 -0.2 1,390,840 + Dsui_1333 0.24 -0.2 1,390,840 + Dsui_1333 0.24 -0.4 1,390,840 + Dsui_1333 0.24 -0.1 1,390,840 + Dsui_1333 0.24 -0.4 1,390,840 + Dsui_1333 0.24 -0.3 1,390,840 + Dsui_1333 0.24 -0.2 1,390,840 + Dsui_1333 0.24 -0.2 1,390,843 - Dsui_1333 0.24 +0.2 1,390,843 - Dsui_1333 0.24 -1.3 1,390,843 - Dsui_1333 0.24 -0.1 1,390,843 - Dsui_1333 0.24 -1.2 1,390,843 - Dsui_1333 0.24 +0.0 1,390,848 - Dsui_1333 0.26 -0.6 1,390,848 - Dsui_1333 0.26 +0.8 1,390,848 - Dsui_1333 0.26 -0.3 1,390,848 - Dsui_1333 0.26 -0.2 1,390,848 - Dsui_1333 0.26 -0.4 1,390,848 - Dsui_1333 0.26 -0.2 1,390,848 - Dsui_1333 0.26 +0.2 1,390,848 - Dsui_1333 0.26 -0.1 1,390,848 - Dsui_1333 0.26 -0.3 1,390,855 - Dsui_1333 0.27 -0.6 1,390,885 - Dsui_1333 0.35 -0.2 1,390,887 + Dsui_1333 0.35 -0.1 1,390,887 + Dsui_1333 0.35 -0.6 1,390,906 + Dsui_1333 0.40 -0.0 1,390,906 + Dsui_1333 0.40 -0.3 1,390,906 + Dsui_1333 0.40 -0.2 1,390,906 + Dsui_1333 0.40 -0.4 1,390,914 - Dsui_1333 0.42 -0.8 1,390,914 - Dsui_1333 0.42 -0.4 1,390,914 - Dsui_1333 0.42 -0.7 1,390,914 - Dsui_1333 0.42 -0.5 1,390,939 - Dsui_1333 0.48 -0.4 1,390,943 + Dsui_1333 0.49 -0.3 1,390,951 - Dsui_1333 0.51 -0.3 1,390,958 + Dsui_1333 0.52 -0.2 1,390,966 - Dsui_1333 0.54 -0.5 1,390,977 - Dsui_1333 0.57 -0.0 1,390,983 + Dsui_1333 0.58 -0.1 1,390,985 - Dsui_1333 0.59 -0.7 1,390,992 - Dsui_1333 0.61 +0.2 1,391,001 - Dsui_1333 0.63 -0.5 1,391,005 + Dsui_1333 0.64 -0.1 1,391,013 - Dsui_1333 0.66 -0.7 1,391,021 - Dsui_1333 0.68 +0.4 1,391,023 + Dsui_1333 0.68 -0.3 1,391,023 + Dsui_1333 0.68 -0.4 1,391,030 + Dsui_1333 0.70 -0.4 1,391,030 + Dsui_1333 0.70 -0.3 1,391,030 + Dsui_1333 0.70 -1.2 1,391,030 + Dsui_1333 0.70 -0.4 1,391,030 + Dsui_1333 0.70 -0.3 1,391,030 + Dsui_1333 0.70 -0.3 1,391,030 + Dsui_1333 0.70 -0.9 1,391,030 + Dsui_1333 0.70 -0.5 1,391,030 + Dsui_1333 0.70 -0.6 1,391,038 - Dsui_1333 0.72 +0.0 1,391,038 - Dsui_1333 0.72 -0.8 1,391,038 - Dsui_1333 0.72 -0.5 1,391,046 + Dsui_1333 0.74 -0.2 1,391,048 + Dsui_1333 0.74 -0.2 1,391,048 - Dsui_1333 0.74 -0.2 1,391,056 + Dsui_1333 0.76 -0.5 1,391,064 - Dsui_1333 0.78 -0.4 1,391,064 - Dsui_1333 0.78 -0.1 1,391,064 - Dsui_1333 0.78 -0.9 1,391,074 + Dsui_1333 0.81 -0.6 1,391,081 + Dsui_1333 0.82 -0.2 1,391,082 + Dsui_1333 0.82 -0.0 1,391,082 - Dsui_1333 0.82 -0.6 1,391,082 - Dsui_1333 0.82 -0.0 1,391,082 - Dsui_1333 0.82 -0.5 1,391,084 - Dsui_1333 0.83 -0.1 1,391,090 - Dsui_1333 0.84 -0.5 1,391,090 - Dsui_1333 0.84 -0.4 1,391,094 - Dsui_1333 0.85 +0.2 1,391,119 - -1.5 1,391,149 + -0.3 1,391,154 + +0.0 1,391,162 - +0.7 1,391,557 - +0.1 1,391,610 - -0.2 1,391,612 + -0.4 1,391,619 - -0.2 1,391,620 + -0.3 1,391,620 - +0.4 1,391,628 - -0.4 1,391,628 - -0.4 1,391,679 - -0.3 1,391,681 + +0.5 1,391,709 + +0.6 1,391,709 + -0.5 1,391,717 - -0.3
Or see this region's nucleotide sequence