Strain Fitness in Shewanella amazonensis SB2B around Sama_3398

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
4,024,646	+		Sama_3396	0.74	-1.1
4,024,647	-		Sama_3396	0.74	+0.2
4,024,660	+		Sama_3396	0.76	+1.3
4,024,660	+		Sama_3396	0.76	+1.9
4,024,660	+		Sama_3396	0.76	+2.9
4,024,661	-		Sama_3396	0.76	-0.3
4,024,704	-		Sama_3396	0.79	-0.9
4,024,729	-		Sama_3396	0.82	+1.2
4,024,729	-		Sama_3396	0.82	+0.7
4,024,729	-		Sama_3396	0.82	+1.0
4,024,729	-		Sama_3396	0.82	+1.5
4,024,762	+		Sama_3396	0.85	+0.7
4,024,762	+		Sama_3396	0.85	+0.5
4,024,763	-		Sama_3396	0.85	+0.7
4,024,771	+		Sama_3396	0.85	+0.6
4,024,771	+		Sama_3396	0.85	+0.9
4,024,772	-		Sama_3396	0.85	-1.2
4,024,803	+		Sama_3396	0.88	-0.0
4,024,803	+		Sama_3396	0.88	+1.1
4,024,803	+		Sama_3396	0.88	-0.9
4,024,804	-		Sama_3396	0.88	+1.7
4,024,804	-		Sama_3396	0.88	+0.9
4,024,804	-		Sama_3396	0.88	-0.0
4,024,804	-		Sama_3396	0.88	-1.5
4,024,804	-		Sama_3396	0.88	-1.7
4,024,804	-		Sama_3396	0.88	+2.6
4,024,804	-		Sama_3396	0.88	-3.1
4,024,817	+		Sama_3396	0.89	-0.3
4,024,818	-		Sama_3396	0.89	-0.4
4,024,819	+		Sama_3396	0.90	+0.1
4,024,820	-		Sama_3396	0.90	+1.1
4,024,820	-		Sama_3396	0.90	-2.5
4,024,885	+				-0.9
4,024,886	-				+0.4
4,024,886	-				-1.4
4,024,886	-				+0.7
4,024,915	+				-1.9
4,024,916	-				-0.1
4,024,936	+				-0.3
4,024,936	+				+0.7
4,024,936	+				+2.7
4,024,936	+				+2.0
4,024,936	+				-0.3
4,024,936	+				-1.4
4,024,936	+				-0.7
4,024,936	+				+1.9
4,024,936	+				+1.3
4,024,936	+				+0.4
4,024,936	+				+0.1
4,024,936	+				+0.3
4,024,936	+				+0.9
4,024,936	+				-0.2
4,024,936	+				-0.7
4,024,936	+				-0.7
4,024,936	+				-2.2
4,024,936	+				-0.0
4,024,937	-				+3.5
4,024,937	-				+1.9
4,024,937	-				-0.5
4,024,937	-				+3.2
4,024,937	-				+1.6
4,024,937	-				+1.1
4,024,937	-				+2.1
4,024,937	-				+2.7
4,024,938	+				+0.8
4,024,938	+				+0.3
4,024,938	+				+0.3
4,024,938	+				-2.2
4,024,938	+				+1.0
4,024,938	+				-1.2
4,024,938	+				+0.3
4,024,939	-				-1.1
4,024,939	-				+1.9
4,024,939	-				-1.3
4,024,939	-				-1.8
4,024,939	-				-2.0
4,024,939	-				+2.6
4,024,939	-				-0.8
4,024,939	-				+0.1
4,024,939	-				-0.3
4,024,939	-				+0.0
4,024,950	+				-1.3
4,024,950	+				-2.6
4,024,951	-				+0.7
4,024,970	+				-2.2
4,024,970	+				-1.1
4,024,970	+				-0.4
4,024,970	+				-0.8
4,024,970	+				+0.3
4,024,970	+				+1.2
4,024,970	+				-0.4
4,024,970	+				+3.0
4,024,970	+				+1.6
4,024,970	+				-1.3
4,024,970	+				+0.2
4,024,970	+				-0.9
4,024,971	-				-1.4
4,024,971	-				+0.5
4,024,971	-				-0.3
4,024,971	-				+1.3
4,024,971	-				-0.6
4,024,971	-				-0.9
4,024,971	-				+1.6
4,024,971	-				-1.8
4,024,971	-				-0.6
4,024,971	-				+2.1
4,024,971	-				+1.2
4,024,974	+				-0.8
4,024,974	+				+1.2
4,024,974	+				+1.6
4,024,974	+				+1.0
4,024,974	+				+1.5
4,024,975	-				-1.6
4,024,975	-				-1.3
4,024,975	-				-0.7
4,024,975	-				-0.0
4,024,975	-				-0.1
4,024,975	-				+1.1
4,024,976	+				+2.0
4,024,976	+				+1.2
4,024,976	+				+0.2
4,024,977	-				+0.7
4,024,977	-				+1.5
4,024,991	-				+0.3
4,025,034	+				+0.9
4,025,110	+				-0.2
4,025,110	+				-0.4
4,025,110	+				-0.1
4,025,110	+				+1.4
4,025,110	+				+0.4
4,025,111	-				+1.1
4,025,111	-				-2.1
4,025,111	-				+1.1
4,025,111	-				+0.9
4,025,251	+		Sama_3397	0.48	-1.4
4,025,251	+		Sama_3397	0.48	+1.1
4,025,251	+		Sama_3397	0.48	+1.0
4,025,252	-		Sama_3397	0.48	+0.6
4,025,307	-		Sama_3397	0.65	-0.4
4,025,307	-		Sama_3397	0.65	+0.9
4,025,307	-		Sama_3397	0.65	-0.1
4,025,321	-		Sama_3397	0.70	-0.1
4,025,400	+				-1.3
4,025,401	-				+0.3
4,025,414	+				+0.2
4,025,493	+				-0.9
4,025,493	+				+1.9
4,025,493	+				-0.9
4,025,494	-				-0.9
4,025,494	-				+0.3
4,025,494	-				-0.1
4,025,498	+				-0.5
4,025,498	+				-0.1
4,025,498	+				+1.2
4,025,498	+				+2.4
4,025,498	+				+0.4
4,025,499	-				-0.9
4,025,499	-				-0.6
4,025,499	-				+0.1
4,025,507	+				-1.7
4,025,508	-				-0.7
4,025,624	+				+1.7
4,025,705	+		Sama_3398	0.14	-0.6
4,025,705	+		Sama_3398	0.14	-0.1
4,025,712	+		Sama_3398	0.15	-0.1
4,025,744	-		Sama_3398	0.20	+0.5
4,025,756	+		Sama_3398	0.23	-1.3
4,025,791	+		Sama_3398	0.28	+1.1
4,025,792	-		Sama_3398	0.29	-2.0
4,025,792	-		Sama_3398	0.29	+1.5
4,025,835	+		Sama_3398	0.36	-1.6
4,025,835	+		Sama_3398	0.36	-1.9
4,025,836	-		Sama_3398	0.36	+1.9
4,025,836	-		Sama_3398	0.36	-0.7
4,025,836	-		Sama_3398	0.36	+2.4
4,025,836	-		Sama_3398	0.36	-0.8
4,025,861	+		Sama_3398	0.40	-0.8
4,025,862	-		Sama_3398	0.40	-1.0
4,025,862	-		Sama_3398	0.40	+0.1
4,025,865	+		Sama_3398	0.41	+0.6
4,025,865	+		Sama_3398	0.41	-0.2
4,025,865	+		Sama_3398	0.41	-0.7
4,025,865	+		Sama_3398	0.41	+0.0
4,025,865	+		Sama_3398	0.41	-1.0
4,025,866	-		Sama_3398	0.41	+1.5
4,025,897	-		Sama_3398	0.46	-0.3
4,025,922	+		Sama_3398	0.51	+0.7
4,025,922	+		Sama_3398	0.51	+3.0
4,025,933	+		Sama_3398	0.52	-0.4
4,025,933	+		Sama_3398	0.52	-0.9
4,025,933	+		Sama_3398	0.52	+0.7
4,025,933	+		Sama_3398	0.52	+0.2
4,025,934	-		Sama_3398	0.53	-0.8
4,025,934	-		Sama_3398	0.53	-0.7
4,026,025	+		Sama_3398	0.68	-1.1
4,026,026	-		Sama_3398	0.68	-1.8
4,026,026	-		Sama_3398	0.68	+0.0
4,026,111	+		Sama_3398	0.83	-0.1
4,026,111	+		Sama_3398	0.83	+0.8
4,026,199	+				+2.9
4,026,199	+				-2.3
4,026,202	+				+1.1
4,026,202	+				-2.2
4,026,202	+				-1.0
4,026,203	-				-0.8
4,026,203	-				-0.7
4,026,203	-				+0.0
4,026,203	-				-0.8
4,026,203	-				+1.1
4,026,213	+				+1.9
4,026,213	+				-0.3
4,026,213	+				+0.6
4,026,214	-				-1.1
4,026,214	-				-1.7
4,026,214	-				-0.1
4,026,214	-				+0.2
4,026,214	-				+0.9
4,026,214	-				+0.0
4,026,214	-				-0.7
4,026,214	-				-0.4
4,026,214	-				+0.6
4,026,214	-				+0.7
4,026,214	-				-1.3
4,026,214	-				-0.3
4,026,236	+				-0.6
4,026,251	-				-0.9
4,026,269	+				-2.1
4,026,269	+				-2.6
4,026,272	+				+1.5
4,026,273	-				+2.0
4,026,309	+				-2.6
4,026,310	-				-0.4
4,026,385	-				+1.5
4,026,385	-				+0.3
4,026,385	-				+0.6
4,026,385	-				+0.0
4,026,385	-				+1.6
4,026,394	-				+1.3
4,026,394	-				-1.6
4,026,394	-				-2.1
4,026,448	+		Sama_3399	0.13	+0.5
4,026,448	+		Sama_3399	0.13	+0.9
4,026,448	+		Sama_3399	0.13	+0.4
4,026,448	+		Sama_3399	0.13	+2.1
4,026,448	+		Sama_3399	0.13	+0.9
4,026,448	+		Sama_3399	0.13	-1.2
4,026,448	+		Sama_3399	0.13	+0.5
4,026,448	+		Sama_3399	0.13	+0.4
4,026,449	-		Sama_3399	0.14	-0.0
4,026,449	-		Sama_3399	0.14	+0.8
4,026,510	+		Sama_3399	0.24	-1.7
4,026,510	+		Sama_3399	0.24	+1.4
4,026,510	+		Sama_3399	0.24	+1.4
4,026,510	+		Sama_3399	0.24	+1.6
4,026,511	-		Sama_3399	0.24	+1.3
4,026,511	-		Sama_3399	0.24	+1.0
4,026,511	-		Sama_3399	0.24	+0.3
4,026,511	-		Sama_3399	0.24	+1.6
4,026,511	-		Sama_3399	0.24	-0.8
4,026,511	-		Sama_3399	0.24	-2.2
4,026,511	-		Sama_3399	0.24	-1.8
4,026,511	-		Sama_3399	0.24	+2.0
4,026,511	-		Sama_3399	0.24	+0.4
4,026,511	-		Sama_3399	0.24	-1.8
4,026,530	-		Sama_3399	0.28	-2.5
4,026,530	-		Sama_3399	0.28	-0.4
4,026,565	+		Sama_3399	0.34	+0.4
4,026,565	+		Sama_3399	0.34	+0.3
4,026,565	+		Sama_3399	0.34	+0.7
4,026,566	-		Sama_3399	0.34	+1.1
4,026,585	+		Sama_3399	0.37	+0.2
4,026,586	-		Sama_3399	0.37	-1.8
4,026,586	-		Sama_3399	0.37	-1.1
4,026,586	-		Sama_3399	0.37	-0.5
4,026,586	-		Sama_3399	0.37	-1.8
4,026,586	-		Sama_3399	0.37	+1.9
4,026,586	-		Sama_3399	0.37	+0.2
4,026,649	+		Sama_3399	0.48	-1.4
4,026,699	+		Sama_3399	0.57	+1.1
4,026,700	-		Sama_3399	0.57	+0.7
4,026,700	-		Sama_3399	0.57	-0.7
4,026,740	-		Sama_3399	0.64	-0.9
4,026,791	-		Sama_3399	0.73	-1.5
4,026,791	-		Sama_3399	0.73	+1.2
4,026,791	-		Sama_3399	0.73	-0.5
4,026,791	-		Sama_3399	0.73	+1.6
4,026,932	+				+0.9
4,026,932	+				-0.2
4,026,932	+				+0.4
4,026,932	+				-0.9
4,026,932	+				+1.5
4,026,932	+				-0.8
4,026,933	-				+4.7
4,026,933	-				-0.4
4,026,933	-				+0.4
4,026,933	-				+0.9
4,026,933	-				-1.9
4,026,933	-				-1.3
4,026,933	-				+0.6
4,026,961	-				-0.4
4,026,966	+				+1.6
4,026,967	-				+0.4
4,026,967	-				+0.4
4,026,983	+				-0.7
4,026,983	+				-1.6
4,026,984	-				+0.6
4,026,984	-				+0.0
4,026,984	-				-0.6
4,026,984	-				+0.9
4,027,019	-				-1.2
4,027,040	+				+0.9
4,027,040	+				-1.4
4,027,040	+				+0.6
4,027,040	+				-0.5
4,027,196	+		Sama_3400	0.19	+0.9
4,027,197	-		Sama_3400	0.19	+1.2