Strain Fitness in Shewanella amazonensis SB2B around Sama_3203

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3201 and Sama_3202 are separated by 230 nucleotidesSama_3202 and Sama_3203 overlap by 1 nucleotidesSama_3203 and Sama_3204 overlap by 4 nucleotides Sama_3201: Sama_3201 - Formiminoglutamase (EC 3.5.3.8) (from data), at 3,791,925 to 3,792,962 _3201 Sama_3202: Sama_3202 - ubiquinone/menaquinone biosynthesis methlytransferase UbiE (RefSeq), at 3,793,193 to 3,793,948 _3202 Sama_3203: Sama_3203 - hypothetical protein (RefSeq), at 3,793,948 to 3,794,565 _3203 Sama_3204: Sama_3204 - ubiquinone biosynthesis protein AarF (RefSeq), at 3,794,562 to 3,796,211 _3204 Position (kb) 3793 3794 3795Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3792.994 kb on - strandat 3793.000 kb on + strandat 3793.010 kb on + strandat 3793.010 kb on + strandat 3793.010 kb on + strandat 3793.034 kb on + strandat 3793.040 kb on + strandat 3793.040 kb on + strandat 3793.040 kb on + strandat 3793.132 kb on + strandat 3793.162 kb on + strandat 3793.180 kb on + strandat 3793.180 kb on + strandat 3793.180 kb on + strandat 3793.971 kb on + strandat 3793.971 kb on + strandat 3794.041 kb on + strand, within Sama_3203at 3794.041 kb on + strand, within Sama_3203at 3794.185 kb on + strand, within Sama_3203at 3794.220 kb on + strand, within Sama_3203at 3794.255 kb on + strand, within Sama_3203at 3794.255 kb on + strand, within Sama_3203at 3794.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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3,792,994 - +1.3
3,793,000 + +0.9
3,793,010 + -2.1
3,793,010 + -1.2
3,793,010 + +0.9
3,793,034 + -2.2
3,793,040 + +1.3
3,793,040 + -1.1
3,793,040 + +2.2
3,793,132 + -0.1
3,793,162 + -0.0
3,793,180 + +2.3
3,793,180 + +0.2
3,793,180 + +0.4
3,793,971 + -1.9
3,793,971 + +0.8
3,794,041 + Sama_3203 0.15 -1.0
3,794,041 + Sama_3203 0.15 +0.3
3,794,185 + Sama_3203 0.38 +1.3
3,794,220 + Sama_3203 0.44 +3.3
3,794,255 + Sama_3203 0.50 +1.3
3,794,255 + Sama_3203 0.50 -1.8
3,794,543 + +0.2

Or see this region's nucleotide sequence