Strain Fitness in Shewanella amazonensis SB2B around Sama_3128

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
3,708,047	+				-0.3
3,708,047	+				+1.3
3,708,047	+				-0.4
3,708,047	+				-1.5
3,708,047	+				+1.2
3,708,048	-				+0.9
3,708,048	-				+1.2
3,708,048	-				+0.1
3,708,052	+				+0.4
3,708,081	+				+0.5
3,708,101	-				+1.4
3,708,101	-				-1.8
3,708,114	+				-1.8
3,708,129	-				-1.0
3,708,171	-				+0.9
3,708,262	+		Sama_3127	0.12	-0.1
3,708,301	+		Sama_3127	0.19	+0.1
3,708,301	+		Sama_3127	0.19	-0.7
3,708,301	+		Sama_3127	0.19	+0.4
3,708,302	-		Sama_3127	0.19	-1.9
3,708,302	-		Sama_3127	0.19	-0.3
3,708,355	+		Sama_3127	0.29	-1.1
3,708,355	+		Sama_3127	0.29	+0.6
3,708,356	-		Sama_3127	0.29	+0.1
3,708,393	+		Sama_3127	0.36	-2.1
3,708,472	-		Sama_3127	0.51	-0.1
3,708,496	+		Sama_3127	0.55	-0.4
3,708,712	-				+3.7
3,708,779	+				-0.1
3,708,779	+				+0.8
3,708,779	+				+4.4
3,708,779	+				-1.5
3,708,779	+				+1.1
3,708,779	+				-0.5
3,708,779	+				-0.9
3,708,779	+				-0.6
3,708,779	+				+2.4
3,708,780	-				+0.9
3,708,780	-				+0.2
3,708,780	-				+0.9
3,708,780	-				-0.6
3,708,780	-				+1.2
3,708,780	-				-2.3
3,708,780	-				+0.7
3,708,782	+				-2.3
3,708,782	+				+0.1
3,708,782	+				+0.3
3,708,782	+				+0.2
3,708,782	+				-2.4
3,708,782	+				-2.5
3,708,782	+				-1.0
3,708,783	-				-2.2
3,708,783	-				+0.1
3,708,783	-				-1.5
3,708,783	-				+0.5
3,708,824	+				-0.5
3,708,936	-				-1.7
3,708,976	-				-1.1
3,709,025	+				+0.8
3,709,025	+				-0.4
3,709,026	-				-0.6
3,709,091	+				-1.2
3,709,091	+				-0.7
3,709,091	+				-0.3
3,709,091	+				-1.5
3,709,091	+				-1.3
3,709,092	-				+0.6
3,709,092	-				+0.3
3,709,164	+				+1.3
3,709,164	+				+0.7
3,709,164	+				-0.3
3,709,164	+				+0.7
3,709,164	+				+2.0
3,709,164	+				-0.4
3,709,164	+				+1.2
3,709,164	+				+1.8
3,709,165	-				-0.6
3,709,165	-				+0.2
3,709,165	-				+1.6
3,709,165	-				-0.3
3,709,165	-				+0.3
3,709,165	-				-0.5
3,709,165	-				-0.6
3,709,165	-				+1.0
3,709,165	-				-3.1
3,709,165	-				-1.1
3,709,165	-				-0.3
3,709,168	+				-0.2
3,709,168	+				-1.1
3,709,168	+				+3.1
3,709,168	+				+2.3
3,709,168	+				-0.5
3,709,168	+				+2.3
3,709,169	-				+0.4
3,709,169	-				+0.3
3,709,169	-				+0.4
3,709,169	-				-0.9
3,709,169	-				+0.1
3,709,169	-				+0.3
3,709,169	-				-0.3
3,709,169	-				-0.1
3,709,169	-				-0.3
3,709,315	-		Sama_3128	0.16	+1.1
3,709,315	-		Sama_3128	0.16	+1.4
3,709,390	+		Sama_3128	0.19	+0.2
3,709,430	+		Sama_3128	0.21	+1.4
3,709,430	+		Sama_3128	0.21	-0.6
3,709,430	+		Sama_3128	0.21	-0.4
3,709,430	+		Sama_3128	0.21	+2.8
3,709,430	+		Sama_3128	0.21	+0.1
3,709,430	+		Sama_3128	0.21	+1.0
3,709,430	+		Sama_3128	0.21	-1.2
3,709,430	+		Sama_3128	0.21	-1.4
3,709,431	-		Sama_3128	0.21	+0.5
3,709,431	-		Sama_3128	0.21	-0.2
3,709,431	-		Sama_3128	0.21	+1.7
3,709,431	-		Sama_3128	0.21	+0.8
3,709,431	-		Sama_3128	0.21	+0.8
3,709,431	-		Sama_3128	0.21	-0.8
3,709,431	-		Sama_3128	0.21	+0.2
3,709,431	-		Sama_3128	0.21	-1.6
3,709,431	-		Sama_3128	0.21	+1.1
3,709,434	+		Sama_3128	0.21	-1.1
3,709,434	+		Sama_3128	0.21	-0.6
3,709,435	-		Sama_3128	0.21	-0.9
3,709,435	-		Sama_3128	0.21	+0.7
3,709,547	+		Sama_3128	0.26	+0.4
3,709,547	+		Sama_3128	0.26	+3.4
3,709,547	+		Sama_3128	0.26	-0.8
3,709,547	+		Sama_3128	0.26	+0.6
3,709,547	+		Sama_3128	0.26	+0.8
3,709,547	+		Sama_3128	0.26	+1.7
3,709,547	+		Sama_3128	0.26	-1.5
3,709,547	+		Sama_3128	0.26	+0.9
3,709,547	+		Sama_3128	0.26	-1.3
3,709,547	+		Sama_3128	0.26	+0.1
3,709,547	+		Sama_3128	0.26	-0.7
3,709,547	+		Sama_3128	0.26	+0.7
3,709,547	+		Sama_3128	0.26	-2.9
3,709,547	+		Sama_3128	0.26	+0.7
3,709,548	-		Sama_3128	0.26	-3.0
3,709,548	-		Sama_3128	0.26	-1.9
3,709,548	-		Sama_3128	0.26	-1.3
3,709,548	-		Sama_3128	0.26	+1.0
3,709,548	-		Sama_3128	0.26	-0.4
3,709,548	-		Sama_3128	0.26	-1.1
3,709,548	-		Sama_3128	0.26	+1.0
3,709,548	-		Sama_3128	0.26	-1.2
3,709,548	-		Sama_3128	0.26	-0.3
3,709,548	-		Sama_3128	0.26	-3.1
3,709,548	-		Sama_3128	0.26	+0.8
3,709,559	+		Sama_3128	0.26	-1.6
3,709,559	+		Sama_3128	0.26	-0.8
3,709,559	+		Sama_3128	0.26	+0.4
3,709,559	+		Sama_3128	0.26	-1.3
3,709,559	+		Sama_3128	0.26	+1.1
3,709,559	+		Sama_3128	0.26	+0.1
3,709,559	+		Sama_3128	0.26	+0.6
3,709,560	-		Sama_3128	0.26	+0.1
3,709,560	-		Sama_3128	0.26	+1.9
3,709,560	-		Sama_3128	0.26	-0.6
3,709,560	-		Sama_3128	0.26	-0.7
3,709,561	+		Sama_3128	0.26	+0.2
3,709,561	+		Sama_3128	0.26	-0.6
3,709,561	+		Sama_3128	0.26	-0.4
3,709,562	-		Sama_3128	0.26	+0.9
3,709,562	-		Sama_3128	0.26	-2.4
3,709,562	-		Sama_3128	0.26	-0.6
3,709,562	-		Sama_3128	0.26	+0.5
3,709,562	-		Sama_3128	0.26	-2.0
3,709,571	+		Sama_3128	0.27	-2.0
3,709,571	+		Sama_3128	0.27	+0.7
3,709,572	-		Sama_3128	0.27	+0.2
3,709,634	+		Sama_3128	0.29	-0.4
3,709,634	+		Sama_3128	0.29	-1.6
3,709,699	-		Sama_3128	0.32	-1.1
3,709,785	-		Sama_3128	0.36	-0.2
3,709,829	+		Sama_3128	0.38	+2.4
3,709,829	+		Sama_3128	0.38	-0.6
3,709,829	+		Sama_3128	0.38	+1.7
3,709,829	+		Sama_3128	0.38	+1.0
3,709,829	+		Sama_3128	0.38	-0.1
3,709,829	+		Sama_3128	0.38	-1.0
3,709,829	+		Sama_3128	0.38	+1.8
3,709,829	+		Sama_3128	0.38	-1.8
3,709,829	+		Sama_3128	0.38	+0.1
3,709,829	+		Sama_3128	0.38	+0.7
3,709,829	+		Sama_3128	0.38	+0.2
3,709,829	+		Sama_3128	0.38	-0.2
3,709,829	+		Sama_3128	0.38	-1.8
3,709,829	+		Sama_3128	0.38	+0.9
3,709,830	-		Sama_3128	0.38	+1.1
3,709,830	-		Sama_3128	0.38	-1.2
3,709,830	-		Sama_3128	0.38	-0.4
3,709,830	-		Sama_3128	0.38	+1.2
3,709,830	-		Sama_3128	0.38	-1.6
3,709,830	-		Sama_3128	0.38	+0.2
3,709,830	-		Sama_3128	0.38	-1.2
3,709,833	+		Sama_3128	0.38	-0.5
3,709,833	+		Sama_3128	0.38	-1.3
3,709,833	+		Sama_3128	0.38	-1.5
3,709,833	+		Sama_3128	0.38	-1.5
3,709,833	+		Sama_3128	0.38	-0.1
3,709,833	+		Sama_3128	0.38	-0.3
3,709,833	+		Sama_3128	0.38	-0.0
3,709,833	+		Sama_3128	0.38	+0.1
3,709,833	+		Sama_3128	0.38	+0.7
3,709,833	+		Sama_3128	0.38	+2.1
3,709,834	-		Sama_3128	0.38	-2.4
3,709,834	-		Sama_3128	0.38	-0.3
3,709,834	-		Sama_3128	0.38	+0.6
3,709,834	-		Sama_3128	0.38	-2.2
3,709,834	-		Sama_3128	0.38	+0.9
3,709,834	-		Sama_3128	0.38	+1.2
3,709,834	-		Sama_3128	0.38	+0.6
3,709,910	+		Sama_3128	0.41	+1.1
3,709,910	+		Sama_3128	0.41	-0.7
3,709,911	-		Sama_3128	0.41	+0.6
3,709,911	-		Sama_3128	0.41	+0.1
3,709,952	+		Sama_3128	0.43	+1.4
3,709,952	+		Sama_3128	0.43	-0.6
3,709,952	+		Sama_3128	0.43	-1.6
3,709,952	+		Sama_3128	0.43	-0.3
3,709,952	+		Sama_3128	0.43	-1.1
3,709,952	+		Sama_3128	0.43	-0.5
3,709,952	+		Sama_3128	0.43	-0.4
3,709,952	+		Sama_3128	0.43	-0.5
3,709,953	-		Sama_3128	0.43	-2.6
3,709,953	-		Sama_3128	0.43	+1.3
3,709,953	-		Sama_3128	0.43	+0.7
3,709,953	-		Sama_3128	0.43	+0.7
3,709,953	-		Sama_3128	0.43	+0.7
3,709,953	-		Sama_3128	0.43	-0.3
3,710,049	+		Sama_3128	0.47	-2.8
3,710,049	+		Sama_3128	0.47	-1.7
3,710,050	-		Sama_3128	0.47	-0.2
3,710,267	+		Sama_3128	0.56	-2.0
3,710,267	+		Sama_3128	0.56	-0.2
3,710,305	+		Sama_3128	0.57	-0.5
3,710,305	+		Sama_3128	0.57	-0.4
3,710,305	+		Sama_3128	0.57	-0.2
3,710,306	-		Sama_3128	0.58	-0.5
3,710,306	-		Sama_3128	0.58	+1.8
3,710,306	-		Sama_3128	0.58	-1.1
3,710,306	-		Sama_3128	0.58	+1.2
3,710,312	+		Sama_3128	0.58	-0.6
3,710,312	+		Sama_3128	0.58	+0.3
3,710,312	+		Sama_3128	0.58	-0.2
3,710,312	+		Sama_3128	0.58	-0.8
3,710,312	+		Sama_3128	0.58	-0.4
3,710,312	+		Sama_3128	0.58	+0.4
3,710,312	+		Sama_3128	0.58	+0.5
3,710,313	-		Sama_3128	0.58	-0.6
3,710,313	-		Sama_3128	0.58	+0.1
3,710,317	+		Sama_3128	0.58	-1.5
3,710,317	+		Sama_3128	0.58	+1.4
3,710,317	+		Sama_3128	0.58	+1.4
3,710,317	+		Sama_3128	0.58	+0.2
3,710,317	+		Sama_3128	0.58	-2.6
3,710,317	+		Sama_3128	0.58	-0.4
3,710,317	+		Sama_3128	0.58	+0.8
3,710,317	+		Sama_3128	0.58	+1.0
3,710,317	+		Sama_3128	0.58	+0.3
3,710,317	+		Sama_3128	0.58	+0.9
3,710,318	-		Sama_3128	0.58	+1.4
3,710,318	-		Sama_3128	0.58	-0.3
3,710,318	-		Sama_3128	0.58	+0.9
3,710,318	-		Sama_3128	0.58	+0.7
3,710,318	-		Sama_3128	0.58	+1.1
3,710,318	-		Sama_3128	0.58	+1.1
3,710,318	-		Sama_3128	0.58	-0.8
3,710,318	-		Sama_3128	0.58	+1.7
3,710,318	-		Sama_3128	0.58	+0.4
3,710,318	-		Sama_3128	0.58	-0.6
3,710,318	-		Sama_3128	0.58	-0.4
3,710,318	-		Sama_3128	0.58	+0.5
3,710,318	-		Sama_3128	0.58	+0.2
3,710,318	-		Sama_3128	0.58	-0.6
3,710,358	+		Sama_3128	0.60	-0.3
3,710,370	+		Sama_3128	0.60	+1.7
3,710,371	-		Sama_3128	0.60	+3.0
3,710,371	-		Sama_3128	0.60	+0.7
3,710,459	+		Sama_3128	0.64	+2.7
3,710,460	-		Sama_3128	0.64	-0.7
3,710,460	-		Sama_3128	0.64	-0.3
3,710,460	-		Sama_3128	0.64	-0.7
3,710,462	+		Sama_3128	0.64	-2.4
3,710,462	+		Sama_3128	0.64	-1.0
3,710,462	+		Sama_3128	0.64	+0.6
3,710,462	+		Sama_3128	0.64	-1.5
3,710,462	+		Sama_3128	0.64	+1.8
3,710,462	+		Sama_3128	0.64	-1.3
3,710,462	+		Sama_3128	0.64	-0.3
3,710,462	+		Sama_3128	0.64	+0.2
3,710,463	-		Sama_3128	0.64	-1.8
3,710,463	-		Sama_3128	0.64	-0.1
3,710,463	-		Sama_3128	0.64	-2.5
3,710,463	-		Sama_3128	0.64	-1.5
3,710,463	-		Sama_3128	0.64	+1.4
3,710,463	-		Sama_3128	0.64	-0.6
3,710,463	-		Sama_3128	0.64	+1.1
3,710,463	-		Sama_3128	0.64	+1.5
3,710,463	-		Sama_3128	0.64	-2.1
3,710,463	-		Sama_3128	0.64	+0.2
3,710,594	+		Sama_3128	0.70	-2.6
3,710,595	-		Sama_3128	0.70	+1.4
3,710,595	-		Sama_3128	0.70	-0.9
3,710,628	-		Sama_3128	0.71	-1.4
3,710,628	-		Sama_3128	0.71	-0.4
3,710,650	-		Sama_3128	0.72	-0.2
3,710,709	-		Sama_3128	0.74	-0.3
3,710,709	-		Sama_3128	0.74	-1.9
3,710,709	-		Sama_3128	0.74	+1.6
3,710,760	+		Sama_3128	0.77	-1.1
3,710,761	-		Sama_3128	0.77	-0.9
3,710,780	+		Sama_3128	0.77	-1.3
3,710,781	-		Sama_3128	0.77	+0.5
3,710,781	-		Sama_3128	0.77	-0.6
3,710,937	+		Sama_3128	0.84	+0.3
3,710,981	+		Sama_3128	0.86	+0.6
3,710,982	-		Sama_3128	0.86	-1.6
3,711,024	+		Sama_3128	0.88	+0.6
3,711,024	+		Sama_3128	0.88	+1.9
3,711,025	-		Sama_3128	0.88	-1.1
3,711,025	-		Sama_3128	0.88	+0.4
3,711,037	+		Sama_3128	0.88	+0.7
3,711,037	+		Sama_3128	0.88	+0.5
3,711,037	+		Sama_3128	0.88	+0.7
3,711,037	+		Sama_3128	0.88	+0.6
3,711,038	-		Sama_3128	0.88	-0.2
3,711,189	-				+3.5
3,711,321	+				+0.4
3,711,321	+				+1.3
3,711,321	+				+1.3
3,711,322	-				-1.1
3,711,322	-				+1.1
3,711,322	-				+0.8
3,711,322	-				+2.4
3,711,322	-				+1.1
3,711,322	-				-0.6
3,711,333	-				+0.3
3,711,340	+				+2.1
3,711,365	+				+1.4
3,711,365	+				+1.0
3,711,365	+				+0.8
3,711,365	+				+3.0
3,711,366	-				+0.3
3,711,366	-				+0.7
3,711,366	-				+0.1
3,711,366	-				+2.5
3,711,366	-				-2.1
3,711,372	+				+5.8
3,711,372	+				+5.9
3,711,963	+		Sama_3129	0.17	+8.3