Strain Fitness in Shewanella amazonensis SB2B around Sama_2976

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
3,545,250	+		Sama_2974	0.48	+1.0
3,545,250	+		Sama_2974	0.48	+2.6
3,545,251	-		Sama_2974	0.48	-2.5
3,545,297	+		Sama_2974	0.57	-0.6
3,545,357	-		Sama_2974	0.68	-0.6
3,545,365	+		Sama_2974	0.70	+0.4
3,545,427	+		Sama_2974	0.81	-0.2
3,545,447	-		Sama_2974	0.85	-1.3
3,545,554	+				-0.7
3,545,554	+				-0.9
3,545,554	+				+0.2
3,545,554	+				-2.4
3,545,554	+				-2.1
3,545,555	-				+1.2
3,545,555	-				-0.8
3,545,555	-				-0.2
3,545,555	-				-0.4
3,545,555	-				+0.8
3,545,558	+				-2.7
3,545,558	+				-0.4
3,545,558	+				-0.5
3,545,558	+				-0.5
3,545,559	-				+2.8
3,545,559	-				-1.4
3,545,559	-				-0.4
3,545,559	-				+1.1
3,545,559	-				+0.9
3,545,559	-				-3.2
3,545,559	-				-1.8
3,545,559	-				+0.2
3,545,559	-				+1.4
3,545,559	-				+0.5
3,545,576	+				-0.3
3,545,577	-				-1.9
3,545,596	+		Sama_2975	0.14	-0.1
3,545,597	-		Sama_2975	0.14	+0.6
3,545,636	-		Sama_2975	0.22	+2.6
3,545,681	+		Sama_2975	0.31	-1.7
3,545,857	+		Sama_2975	0.66	-0.5
3,545,858	-		Sama_2975	0.66	-0.2
3,545,858	-		Sama_2975	0.66	-1.6
3,545,858	-		Sama_2975	0.66	+0.6
3,545,858	-		Sama_2975	0.66	+0.1
3,545,858	-		Sama_2975	0.66	-1.5
3,545,928	-		Sama_2975	0.81	+0.9
3,545,928	-		Sama_2975	0.81	-0.6
3,545,935	+		Sama_2975	0.82	+4.2
3,545,935	+		Sama_2975	0.82	-0.5
3,545,936	-		Sama_2975	0.82	+0.5
3,545,973	+		Sama_2975	0.90	+1.1
3,545,973	+		Sama_2975	0.90	+0.4
3,545,974	-				+1.8
3,546,011	+				+1.1
3,546,053	-				-0.0
3,546,057	+				-2.8
3,546,057	+				-0.5
3,546,057	+				+1.0
3,546,057	+				+0.8
3,546,057	+				+3.7
3,546,057	+				+0.9
3,546,057	+				+0.0
3,546,057	+				+0.1
3,546,057	+				-0.2
3,546,057	+				+0.3
3,546,057	+				-0.5
3,546,057	+				-1.7
3,546,057	+				-2.9
3,546,057	+				-0.8
3,546,057	+				+0.6
3,546,057	+				-0.4
3,546,057	+				-0.4
3,546,057	+				-1.6
3,546,057	+				-1.4
3,546,057	+				+0.7
3,546,057	+				-0.1
3,546,057	+				-1.2
3,546,058	-				-1.1
3,546,058	-				-3.0
3,546,058	-				-1.2
3,546,058	-				-1.4
3,546,058	-				-1.6
3,546,058	-				-1.3
3,546,058	-				-1.6
3,546,058	-				-1.9
3,546,058	-				-1.2
3,546,058	-				+0.4
3,546,058	-				-0.3
3,546,058	-				+0.1
3,546,058	-				+0.6
3,546,058	-				+0.1
3,546,058	-				+1.3
3,546,058	-				+0.6
3,546,058	-				-1.2
3,546,058	-				-3.2
3,546,058	-				+0.2
3,546,126	+				+2.5
3,546,127	-				-0.4
3,546,132	+				+0.2
3,546,132	+				-1.1
3,546,132	+				+0.9
3,546,132	+				+2.6
3,546,132	+				-1.4
3,546,132	+				+0.1
3,546,132	+				+1.5
3,546,133	-				-1.5
3,546,133	-				+0.3
3,546,133	-				-2.3
3,546,133	-				-0.5
3,546,133	-				-0.9
3,546,133	-				+0.1
3,546,133	-				+1.9
3,546,133	-				+0.5
3,546,238	+				-1.2
3,546,238	+				+0.5
3,546,238	+				+1.1
3,546,239	-				-0.1
3,546,239	-				-0.3
3,546,239	-				-0.4
3,546,239	-				-2.6
3,546,239	-				-0.5
3,546,263	+		Sama_2976	0.10	+1.6
3,546,263	+		Sama_2976	0.10	-0.7
3,546,263	+		Sama_2976	0.10	-0.2
3,546,263	+		Sama_2976	0.10	+0.3
3,546,264	-		Sama_2976	0.10	-1.1
3,546,264	-		Sama_2976	0.10	+0.8
3,546,273	+		Sama_2976	0.11	-0.4
3,546,274	-		Sama_2976	0.11	-2.9
3,546,274	-		Sama_2976	0.11	+0.5
3,546,274	-		Sama_2976	0.11	-1.8
3,546,274	-		Sama_2976	0.11	+0.1
3,546,274	-		Sama_2976	0.11	-1.2
3,546,277	+		Sama_2976	0.11	-0.4
3,546,277	+		Sama_2976	0.11	+0.3
3,546,286	+		Sama_2976	0.12	-0.7
3,546,297	-		Sama_2976	0.13	-2.1
3,546,313	+		Sama_2976	0.14	+1.0
3,546,314	-		Sama_2976	0.14	-2.2
3,546,356	+		Sama_2976	0.18	-0.1
3,546,356	+		Sama_2976	0.18	+0.5
3,546,356	+		Sama_2976	0.18	-0.0
3,546,357	-		Sama_2976	0.18	-0.9
3,546,357	-		Sama_2976	0.18	+0.9
3,546,409	+		Sama_2976	0.22	-0.5
3,546,409	+		Sama_2976	0.22	+1.2
3,546,409	+		Sama_2976	0.22	-1.2
3,546,410	-		Sama_2976	0.22	+0.3
3,546,410	-		Sama_2976	0.22	+1.1
3,546,410	-		Sama_2976	0.22	+1.5
3,546,410	-		Sama_2976	0.22	-1.4
3,546,410	-		Sama_2976	0.22	+0.3
3,546,492	-		Sama_2976	0.29	-0.8
3,546,492	-		Sama_2976	0.29	+1.3
3,546,512	+		Sama_2976	0.31	+0.1
3,546,513	-		Sama_2976	0.31	+0.9
3,546,530	+		Sama_2976	0.32	+1.0
3,546,530	+		Sama_2976	0.32	+2.8
3,546,530	+		Sama_2976	0.32	+1.3
3,546,531	-		Sama_2976	0.32	-0.7
3,546,531	-		Sama_2976	0.32	-0.9
3,546,587	+		Sama_2976	0.37	+0.3
3,546,587	+		Sama_2976	0.37	-2.1
3,546,587	+		Sama_2976	0.37	-0.6
3,546,588	-		Sama_2976	0.37	-0.3
3,546,610	-		Sama_2976	0.39	+0.5
3,546,614	+		Sama_2976	0.39	-0.3
3,546,614	+		Sama_2976	0.39	+2.6
3,546,614	+		Sama_2976	0.39	+0.1
3,546,614	+		Sama_2976	0.39	+0.3
3,546,614	+		Sama_2976	0.39	-0.6
3,546,615	-		Sama_2976	0.39	-0.2
3,546,615	-		Sama_2976	0.39	-0.5
3,546,615	-		Sama_2976	0.39	-0.2
3,546,622	+		Sama_2976	0.40	+0.4
3,546,622	+		Sama_2976	0.40	-0.4
3,546,622	+		Sama_2976	0.40	-0.1
3,546,622	+		Sama_2976	0.40	+0.2
3,546,622	+		Sama_2976	0.40	-0.4
3,546,623	-		Sama_2976	0.40	+0.0
3,546,623	-		Sama_2976	0.40	-0.8
3,546,623	-		Sama_2976	0.40	-1.2
3,546,623	-		Sama_2976	0.40	-2.4
3,546,623	-		Sama_2976	0.40	-0.0
3,546,623	-		Sama_2976	0.40	-1.4
3,546,623	-		Sama_2976	0.40	-1.6
3,546,665	+		Sama_2976	0.43	-1.9
3,546,671	+		Sama_2976	0.44	-0.9
3,546,671	+		Sama_2976	0.44	+0.7
3,546,671	+		Sama_2976	0.44	+1.0
3,546,672	-		Sama_2976	0.44	+1.8
3,546,672	-		Sama_2976	0.44	-0.9
3,546,672	-		Sama_2976	0.44	+0.9
3,546,672	-		Sama_2976	0.44	-1.4
3,546,689	+		Sama_2976	0.45	-0.3
3,546,690	-		Sama_2976	0.45	+3.5
3,546,710	-		Sama_2976	0.47	+0.2
3,546,713	+		Sama_2976	0.47	+1.0
3,546,714	-		Sama_2976	0.47	+0.5
3,546,714	-		Sama_2976	0.47	-1.4
3,546,714	-		Sama_2976	0.47	-2.4
3,546,724	-		Sama_2976	0.48	-0.9
3,546,809	+		Sama_2976	0.55	+0.1
3,546,810	-		Sama_2976	0.55	-2.1
3,546,810	-		Sama_2976	0.55	+0.8
3,546,823	+		Sama_2976	0.56	-2.4
3,546,823	+		Sama_2976	0.56	-1.8
3,546,824	-		Sama_2976	0.56	-0.1
3,546,824	-		Sama_2976	0.56	-0.7
3,546,824	-		Sama_2976	0.56	-1.4
3,546,828	+		Sama_2976	0.57	-0.5
3,546,828	+		Sama_2976	0.57	+0.4
3,546,828	+		Sama_2976	0.57	+0.1
3,546,828	+		Sama_2976	0.57	-0.6
3,546,829	-		Sama_2976	0.57	-0.1
3,546,829	-		Sama_2976	0.57	-0.7
3,546,859	+		Sama_2976	0.59	-2.1
3,546,859	+		Sama_2976	0.59	+1.3
3,546,859	+		Sama_2976	0.59	-0.8
3,546,922	+		Sama_2976	0.64	-0.5
3,546,922	+		Sama_2976	0.64	+1.3
3,546,922	+		Sama_2976	0.64	+2.3
3,546,922	+		Sama_2976	0.64	+0.8
3,546,922	+		Sama_2976	0.64	+0.2
3,546,922	+		Sama_2976	0.64	-0.2
3,546,923	-		Sama_2976	0.64	+1.3
3,546,923	-		Sama_2976	0.64	+0.1
3,546,923	-		Sama_2976	0.64	-1.7
3,546,923	-		Sama_2976	0.64	+0.2
3,547,067	+		Sama_2976	0.76	+0.2
3,547,067	+		Sama_2976	0.76	-0.3
3,547,068	-		Sama_2976	0.76	+1.8
3,547,068	-		Sama_2976	0.76	+1.0
3,547,068	-		Sama_2976	0.76	-1.4
3,547,170	-		Sama_2976	0.85	+0.1
3,547,227	-		Sama_2976	0.89	-0.7
3,547,232	+		Sama_2976	0.90	+2.3
3,547,233	-		Sama_2976	0.90	+1.0
3,547,277	+				+0.3
3,547,331	+				+0.2
3,547,331	+				-0.7
3,547,332	-				+1.1
3,547,332	-				+0.1
3,547,332	-				-0.9
3,547,332	-				+1.6
3,547,332	-				+1.5
3,547,332	-				+3.3
3,547,332	-				-1.1
3,547,381	-				-1.5
3,547,395	+				-0.4
3,547,395	+				+1.2
3,547,395	+				-2.3
3,547,396	-				-0.7
3,547,396	-				+1.2
3,547,396	-				-0.5
3,547,434	+		Sama_2977	0.11	+0.6
3,547,435	-		Sama_2977	0.11	-0.0
3,547,563	+		Sama_2977	0.32	+1.2
3,547,563	+		Sama_2977	0.32	-0.5
3,547,563	+		Sama_2977	0.32	+0.2
3,547,563	+		Sama_2977	0.32	+0.2
3,547,564	-		Sama_2977	0.32	+0.9
3,547,564	-		Sama_2977	0.32	+1.9
3,547,564	-		Sama_2977	0.32	-0.2
3,547,564	-		Sama_2977	0.32	-0.7
3,547,564	-		Sama_2977	0.32	+0.2
3,547,565	+		Sama_2977	0.32	-0.4
3,547,566	-		Sama_2977	0.32	+1.1
3,547,566	-		Sama_2977	0.32	-0.6
3,547,581	+		Sama_2977	0.35	+1.4
3,547,611	+		Sama_2977	0.40	-3.3
3,547,611	+		Sama_2977	0.40	-0.7
3,547,611	+		Sama_2977	0.40	-2.7
3,547,650	-		Sama_2977	0.46	-0.2
3,547,662	+		Sama_2977	0.48	+0.6
3,547,663	-		Sama_2977	0.48	-0.5
3,547,716	+		Sama_2977	0.57	+0.2
3,547,736	+		Sama_2977	0.60	-0.4
3,547,785	+		Sama_2977	0.68	+0.1
3,547,785	+		Sama_2977	0.68	+0.5
3,547,790	-		Sama_2977	0.69	-1.4
3,547,800	-		Sama_2977	0.71	-0.7
3,547,800	-		Sama_2977	0.71	-0.2
3,547,869	+		Sama_2977	0.82	+0.8
3,547,869	+		Sama_2977	0.82	+2.4
3,547,869	+		Sama_2977	0.82	+0.5
3,547,870	-		Sama_2977	0.82	-0.4
3,547,870	-		Sama_2977	0.82	+0.6
3,547,870	-		Sama_2977	0.82	+1.3
3,547,870	-		Sama_2977	0.82	+0.6
3,547,870	-		Sama_2977	0.82	-0.4
3,547,870	-		Sama_2977	0.82	+1.6
3,547,870	-		Sama_2977	0.82	-0.0
3,547,899	+		Sama_2977	0.87	-1.8
3,547,899	+		Sama_2977	0.87	+2.8
3,547,899	+		Sama_2977	0.87	+0.2
3,547,899	+		Sama_2977	0.87	-1.5
3,547,899	+		Sama_2977	0.87	-0.1
3,547,900	-		Sama_2977	0.87	-1.4
3,547,900	-		Sama_2977	0.87	-1.9
3,547,900	-		Sama_2977	0.87	-0.7
3,547,900	-		Sama_2977	0.87	+0.1
3,547,900	-		Sama_2977	0.87	+4.0
3,547,900	-		Sama_2977	0.87	-0.6
3,547,900	-		Sama_2977	0.87	+1.2
3,547,900	-		Sama_2977	0.87	-1.0
3,547,900	-		Sama_2977	0.87	-0.3
3,547,900	-		Sama_2977	0.87	-0.4
3,547,900	-		Sama_2977	0.87	+2.6
3,547,938	+				-1.2
3,547,938	+				-1.7
3,547,939	-				-1.5
3,547,962	+				+0.6
3,547,962	+				+1.9
3,547,962	+				+0.3
3,547,962	+				-0.1
3,547,962	+				+0.3
3,547,963	-				-2.4
3,547,963	-				-0.7
3,547,963	-				+0.1
3,547,967	+				+0.4
3,547,967	+				+0.6
3,547,968	-				+0.7
3,547,968	-				+2.8
3,547,968	-				-3.6
3,547,968	-				-1.1
3,547,968	-				-0.4
3,547,983	+				+0.8
3,547,983	+				+0.5
3,548,015	+				+0.6
3,548,015	+				-0.4
3,548,015	+				-0.7
3,548,015	+				-0.5
3,548,015	+				+0.1
3,548,015	+				-0.1
3,548,015	+				-0.5
3,548,015	+				+0.6
3,548,015	+				-0.2
3,548,016	-				+0.1
3,548,016	-				+0.8
3,548,016	-				-1.1
3,548,016	-				+1.2
3,548,016	-				+1.6
3,548,016	-				-0.1
3,548,016	-				+0.1
3,548,020	+				+0.6
3,548,021	-				-0.8
3,548,032	+				+0.6
3,548,091	+		Sama_2978	0.16	+2.1
3,548,092	-		Sama_2978	0.17	+0.5
3,548,092	-		Sama_2978	0.17	-3.2
3,548,092	-		Sama_2978	0.17	-0.5
3,548,092	-		Sama_2978	0.17	+1.2
3,548,185	+		Sama_2978	0.31	-0.9
3,548,185	+		Sama_2978	0.31	+0.7
3,548,185	+		Sama_2978	0.31	+0.9
3,548,185	+		Sama_2978	0.31	+0.1
3,548,185	+		Sama_2978	0.31	+2.3
3,548,186	-		Sama_2978	0.32	+0.8
3,548,186	-		Sama_2978	0.32	-0.2
3,548,278	+		Sama_2978	0.46	+1.3
3,548,278	+		Sama_2978	0.46	-0.1
3,548,278	+		Sama_2978	0.46	-0.7
3,548,278	+		Sama_2978	0.46	-0.4
3,548,278	+		Sama_2978	0.46	+1.3
3,548,278	+		Sama_2978	0.46	+1.3
3,548,278	+		Sama_2978	0.46	+3.1
3,548,279	-		Sama_2978	0.46	+1.6
3,548,279	-		Sama_2978	0.46	-0.9
3,548,279	-		Sama_2978	0.46	-0.1
3,548,324	+		Sama_2978	0.54	-0.6
3,548,325	-		Sama_2978	0.54	+0.8
3,548,353	+		Sama_2978	0.58	+1.4
3,548,354	-		Sama_2978	0.58	+2.5