Strain Fitness in Shewanella amazonensis SB2B around Sama_2856

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
3,394,010	+		Sama_2855	0.34	+1.4
3,394,011	-		Sama_2855	0.34	+0.1
3,394,011	-		Sama_2855	0.34	-1.0
3,394,100	+		Sama_2855	0.40	+0.3
3,394,100	+		Sama_2855	0.40	+1.9
3,394,100	+		Sama_2855	0.40	+0.4
3,394,100	+		Sama_2855	0.40	-0.1
3,394,101	-		Sama_2855	0.40	-0.4
3,394,242	-		Sama_2855	0.50	+1.8
3,394,314	+		Sama_2855	0.55	+1.3
3,394,314	+		Sama_2855	0.55	+0.2
3,394,314	+		Sama_2855	0.55	+0.7
3,394,314	+		Sama_2855	0.55	-0.8
3,394,314	+		Sama_2855	0.55	-0.7
3,394,314	+		Sama_2855	0.55	+0.3
3,394,314	+		Sama_2855	0.55	+0.1
3,394,315	-		Sama_2855	0.55	-2.2
3,394,315	-		Sama_2855	0.55	+2.2
3,394,315	-		Sama_2855	0.55	-2.3
3,394,315	-		Sama_2855	0.55	+0.9
3,394,315	-		Sama_2855	0.55	-0.5
3,394,315	-		Sama_2855	0.55	-0.5
3,394,315	-		Sama_2855	0.55	+1.0
3,394,349	+		Sama_2855	0.57	-1.1
3,394,349	+		Sama_2855	0.57	-0.7
3,394,350	-		Sama_2855	0.57	+0.5
3,394,350	-		Sama_2855	0.57	+0.2
3,394,350	-		Sama_2855	0.57	+0.2
3,394,359	+		Sama_2855	0.58	-0.5
3,394,383	+		Sama_2855	0.60	-0.6
3,394,384	-		Sama_2855	0.60	-0.5
3,394,403	+		Sama_2855	0.61	+0.5
3,394,410	+		Sama_2855	0.61	-1.6
3,394,410	+		Sama_2855	0.61	+0.5
3,394,410	+		Sama_2855	0.61	+1.0
3,394,410	+		Sama_2855	0.61	+0.9
3,394,447	+		Sama_2855	0.64	-2.0
3,394,447	+		Sama_2855	0.64	+1.1
3,394,647	+		Sama_2855	0.78	+1.4
3,394,647	+		Sama_2855	0.78	+0.4
3,394,648	-		Sama_2855	0.78	-2.7
3,394,648	-		Sama_2855	0.78	+1.6
3,394,648	-		Sama_2855	0.78	+1.3
3,394,648	-		Sama_2855	0.78	-0.4
3,394,648	-		Sama_2855	0.78	+0.4
3,394,680	+		Sama_2855	0.80	-0.5
3,394,681	-		Sama_2855	0.80	+0.7
3,394,681	-		Sama_2855	0.80	-1.3
3,394,917	+				+0.4
3,395,078	+		Sama_2856	0.17	-1.3
3,395,108	+		Sama_2856	0.22	-0.1
3,395,109	-		Sama_2856	0.23	-0.8
3,395,329	+		Sama_2856	0.60	-1.5
3,395,458	-		Sama_2856	0.82	-0.1
3,395,550	-				-2.7
3,395,550	-				+0.5
3,395,559	+				+2.0
3,395,559	+				+0.7
3,395,559	+				+1.0
3,395,605	+				-0.3
3,395,605	+				+0.2
3,395,605	+				+0.1
3,395,605	+				+0.9
3,395,605	+				+0.6
3,395,605	+				+1.5
3,395,606	-				-0.3
3,395,606	-				+2.1
3,395,606	-				+1.0
3,395,606	-				+2.0
3,395,606	-				-0.7
3,395,613	+				+1.2
3,395,613	+				-0.6
3,395,613	+				+0.8
3,395,613	+				-1.8
3,395,614	-				+0.4
3,395,614	-				-1.0
3,395,614	-				-0.9
3,395,621	-				+0.8
3,395,636	+				-1.8
3,395,676	+				-0.4
3,395,676	+				-0.8
3,395,677	-				-1.9
3,395,677	-				+4.3
3,395,677	-				-0.8
3,395,677	-				+0.1
3,395,732	+				-2.0
3,395,820	+		Sama_2857	0.18	-0.0
3,395,820	+		Sama_2857	0.18	-2.6
3,395,820	+		Sama_2857	0.18	+1.0
3,395,821	-		Sama_2857	0.18	-1.3
3,395,821	-		Sama_2857	0.18	+1.8
3,395,821	-		Sama_2857	0.18	+1.1
3,395,911	-		Sama_2857	0.29	+0.6
3,395,960	+		Sama_2857	0.36	-0.0
3,395,960	+		Sama_2857	0.36	+0.2
3,395,961	-		Sama_2857	0.36	+0.3
3,395,961	-		Sama_2857	0.36	+0.0
3,395,961	-		Sama_2857	0.36	+1.8
3,395,961	-		Sama_2857	0.36	+0.7
3,396,008	+		Sama_2857	0.42	+0.8
3,396,008	+		Sama_2857	0.42	-0.3
3,396,008	+		Sama_2857	0.42	+2.0
3,396,009	-		Sama_2857	0.42	+2.7
3,396,011	+		Sama_2857	0.42	+0.3
3,396,011	+		Sama_2857	0.42	+1.0
3,396,011	+		Sama_2857	0.42	+0.1
3,396,011	+		Sama_2857	0.42	-1.0
3,396,012	-		Sama_2857	0.42	-0.7
3,396,012	-		Sama_2857	0.42	+1.0
3,396,012	-		Sama_2857	0.42	+0.6
3,396,012	-		Sama_2857	0.42	+0.8
3,396,024	+		Sama_2857	0.44	-0.8
3,396,025	-		Sama_2857	0.44	-0.0
3,396,050	+		Sama_2857	0.47	-2.8
3,396,050	+		Sama_2857	0.47	-0.6
3,396,058	-		Sama_2857	0.48	+0.6
3,396,058	-		Sama_2857	0.48	-0.1
3,396,058	-		Sama_2857	0.48	+1.7
3,396,123	+		Sama_2857	0.56	-2.5
3,396,123	+		Sama_2857	0.56	-1.4
3,396,216	+		Sama_2857	0.68	+1.3
3,396,216	+		Sama_2857	0.68	-0.5
3,396,216	+		Sama_2857	0.68	+1.1
3,396,217	-		Sama_2857	0.68	+0.3
3,396,217	-		Sama_2857	0.68	+0.3
3,396,217	-		Sama_2857	0.68	+0.0
3,396,217	-		Sama_2857	0.68	-1.0
3,396,217	-		Sama_2857	0.68	-2.6
3,396,217	-		Sama_2857	0.68	+0.3
3,396,273	+		Sama_2857	0.75	-1.2
3,396,273	+		Sama_2857	0.75	+0.7
3,396,273	+		Sama_2857	0.75	-1.5
3,396,273	+		Sama_2857	0.75	-0.6
3,396,273	+		Sama_2857	0.75	+1.7
3,396,273	+		Sama_2857	0.75	+2.2
3,396,273	+		Sama_2857	0.75	+2.0
3,396,273	+		Sama_2857	0.75	-1.8
3,396,273	+		Sama_2857	0.75	-0.9
3,396,273	+		Sama_2857	0.75	-0.3
3,396,273	+		Sama_2857	0.75	-0.3
3,396,274	-		Sama_2857	0.76	+0.8
3,396,274	-		Sama_2857	0.76	+1.2
3,396,274	-		Sama_2857	0.76	+0.7
3,396,274	-		Sama_2857	0.76	+0.6
3,396,274	-		Sama_2857	0.76	-1.9
3,396,274	-		Sama_2857	0.76	+1.0
3,396,274	-		Sama_2857	0.76	-0.0
3,396,274	-		Sama_2857	0.76	+0.8
3,396,274	-		Sama_2857	0.76	-0.8
3,396,274	-		Sama_2857	0.76	+2.5
3,396,274	-		Sama_2857	0.76	+0.7
3,396,275	+		Sama_2857	0.76	+0.0
3,396,276	-		Sama_2857	0.76	-1.3
3,396,276	-		Sama_2857	0.76	+1.2
3,396,276	-		Sama_2857	0.76	+2.6
3,396,276	-		Sama_2857	0.76	-3.3
3,396,276	-		Sama_2857	0.76	+1.2
3,396,302	+		Sama_2857	0.79	+0.2
3,396,323	+		Sama_2857	0.82	-1.4
3,396,324	-		Sama_2857	0.82	+1.3
3,396,324	-		Sama_2857	0.82	-1.0
3,396,324	-		Sama_2857	0.82	-1.4
3,396,394	-				+0.4
3,396,394	-				-0.5
3,396,470	+				-1.3
3,396,470	+				+0.4
3,396,470	+				-0.1
3,396,471	-				+0.6
3,396,478	+				-1.4
3,396,478	+				+0.0
3,396,478	+				+0.3
3,396,478	+				+0.8
3,396,479	-				-2.8
3,396,479	-				+0.6
3,396,479	-				-0.7
3,396,479	-				-1.8
3,396,495	+				-1.1
3,396,495	+				-0.2
3,396,496	-				-0.4
3,396,525	-		Sama_2858	0.16	+1.1
3,396,525	-		Sama_2858	0.16	+1.1
3,396,525	-		Sama_2858	0.16	+0.3
3,396,558	+		Sama_2858	0.25	+0.1
3,396,559	-		Sama_2858	0.25	+0.2
3,396,559	-		Sama_2858	0.25	+1.2