Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuS and Sama_2583 are separated by 95 nucleotides Sama_2583 and Sama_2584 overlap by 1 nucleotides Sama_2584 and Sama_2585 are separated by 1 nucleotides Sama_2585 and Sama_2586 are separated by 72 nucleotides
Sama_2582: leuS - leucyl-tRNA synthetase (RefSeq), at 3,089,606 to 3,092,200
leuS
Sama_2583: Sama_2583 - rare lipoprotein B (RefSeq), at 3,092,296 to 3,092,790
_2583
Sama_2584: Sama_2584 - DNA-directed DNA polymerase (RefSeq), at 3,092,790 to 3,093,818
_2584
Sama_2585: Sama_2585 - nicotinate-nucleotide adenylyltransferase (RefSeq), at 3,093,820 to 3,094,470
_2585
Sama_2586: Sama_2586 - iojap domain-containing protein (RefSeq), at 3,094,543 to 3,094,869
_2586
Position (kb)
3092
3093
3094 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3092.205 kb on + strand at 3092.271 kb on + strand at 3093.819 kb on + strand at 3093.819 kb on + strand at 3093.819 kb on + strand at 3093.819 kb on + strand at 3093.819 kb on + strand at 3093.820 kb on - strand at 3093.825 kb on + strand at 3093.849 kb on + strand at 3094.499 kb on - strand at 3094.534 kb on + strand at 3094.578 kb on + strand, within Sama_2586 at 3094.593 kb on + strand, within Sama_2586 at 3094.593 kb on + strand, within Sama_2586 at 3094.613 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.737 kb on + strand, within Sama_2586 at 3094.737 kb on + strand, within Sama_2586
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 3,092,205 + +0.4 3,092,271 + +1.3 3,093,819 + +0.3 3,093,819 + +0.1 3,093,819 + -1.3 3,093,819 + -2.1 3,093,819 + +2.6 3,093,820 - +0.4 3,093,825 + -1.4 3,093,849 + -1.7 3,094,499 - -2.5 3,094,534 + +1.0 3,094,578 + Sama_2586 0.11 -1.7 3,094,593 + Sama_2586 0.15 +0.9 3,094,593 + Sama_2586 0.15 -0.9 3,094,613 + Sama_2586 0.21 -0.9 3,094,648 + Sama_2586 0.32 +0.2 3,094,648 + Sama_2586 0.32 +1.0 3,094,648 + Sama_2586 0.32 -0.7 3,094,648 + Sama_2586 0.32 +0.3 3,094,648 + Sama_2586 0.32 +1.4 3,094,737 + Sama_2586 0.59 -2.6 3,094,737 + Sama_2586 0.59 -0.8
Or see this region's nucleotide sequence