Strain Fitness in Shewanella amazonensis SB2B around Sama_2502

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
3,002,541	+		Sama_2500	0.26	-3.4
3,002,541	+		Sama_2500	0.26	+0.6
3,002,541	+		Sama_2500	0.26	-0.8
3,002,542	-		Sama_2500	0.26	-0.2
3,002,542	-		Sama_2500	0.26	+1.6
3,002,577	-		Sama_2500	0.35	-3.0
3,002,577	-		Sama_2500	0.35	-0.2
3,002,637	+		Sama_2500	0.51	-2.5
3,002,637	+		Sama_2500	0.51	+1.5
3,002,638	-		Sama_2500	0.51	-1.0
3,002,638	-		Sama_2500	0.51	+0.6
3,002,638	-		Sama_2500	0.51	-1.4
3,002,647	+		Sama_2500	0.53	-0.5
3,002,675	+		Sama_2500	0.60	+1.4
3,002,676	-		Sama_2500	0.61	-0.6
3,002,701	+		Sama_2500	0.67	+0.4
3,002,702	-		Sama_2500	0.67	+1.1
3,002,735	+		Sama_2500	0.76	-0.5
3,002,736	-		Sama_2500	0.76	+1.1
3,002,736	-		Sama_2500	0.76	+1.8
3,002,736	-		Sama_2500	0.76	-0.5
3,002,747	+		Sama_2500	0.79	+1.9
3,002,748	-		Sama_2500	0.79	-1.6
3,002,748	-		Sama_2500	0.79	-2.3
3,002,748	-		Sama_2500	0.79	-1.2
3,002,803	+				+0.3
3,002,804	-				-0.3
3,002,878	+				+0.4
3,002,879	-				-0.2
3,002,879	-				+0.9
3,002,879	-				+1.3
3,002,879	-				+1.8
3,002,879	-				+0.0
3,002,879	-				+0.8
3,002,911	+				-2.1
3,002,963	-				-1.3
3,002,999	+				+1.6
3,003,000	-				-0.1
3,003,014	-				+1.4
3,003,042	+				+2.4
3,003,042	+				-0.6
3,003,043	-				+2.0
3,003,047	-				+0.5
3,003,060	-				-2.0
3,003,085	+				+0.6
3,003,085	+				+0.4
3,003,086	-				-1.6
3,003,086	-				-0.1
3,003,119	+				+0.8
3,003,119	+				-1.1
3,003,120	-				+0.8
3,003,124	+				-0.8
3,003,258	+		Sama_2501	0.70	+0.5
3,003,258	+		Sama_2501	0.70	-2.0
3,003,259	-		Sama_2501	0.70	-1.2
3,003,307	-				-1.2
3,003,360	+				-1.5
3,003,361	-				+0.8
3,003,361	-				+1.4
3,003,422	+				+0.4
3,003,429	+				-2.3
3,003,429	+				-1.9
3,003,429	+				-0.3
3,003,430	-				-1.0
3,003,430	-				-0.6
3,003,440	+				-0.2
3,003,441	-				-1.2
3,003,563	-				+0.6
3,003,673	+				-0.2
3,003,673	+				-0.6
3,003,674	-				-1.5
3,003,674	-				-0.1
3,003,674	-				-0.6
3,003,687	-				-0.5
3,003,731	-				+0.4
3,003,778	+		Sama_2502	0.12	-1.2
3,003,785	-		Sama_2502	0.13	+0.7
3,003,785	-		Sama_2502	0.13	+0.6
3,003,818	+		Sama_2502	0.14	-1.8
3,003,818	+		Sama_2502	0.14	+2.8
3,003,818	+		Sama_2502	0.14	+0.4
3,003,819	-		Sama_2502	0.14	+1.0
3,003,819	-		Sama_2502	0.14	-1.9
3,004,045	+		Sama_2502	0.26	-1.0
3,004,045	+		Sama_2502	0.26	+1.1
3,004,046	-		Sama_2502	0.26	+1.9
3,004,046	-		Sama_2502	0.26	+0.6
3,004,105	+		Sama_2502	0.29	+0.9
3,004,105	+		Sama_2502	0.29	-1.8
3,004,105	+		Sama_2502	0.29	-0.6
3,004,105	+		Sama_2502	0.29	+1.9
3,004,106	-		Sama_2502	0.29	+1.1
3,004,106	-		Sama_2502	0.29	+0.4
3,004,139	-		Sama_2502	0.31	+0.5
3,004,229	+		Sama_2502	0.35	+0.5
3,004,229	+		Sama_2502	0.35	-0.2
3,004,230	-		Sama_2502	0.35	+0.0
3,004,230	-		Sama_2502	0.35	+0.2
3,004,230	-		Sama_2502	0.35	+0.9
3,004,230	-		Sama_2502	0.35	+0.1
3,004,230	-		Sama_2502	0.35	+0.0
3,004,230	-		Sama_2502	0.35	-0.6
3,004,235	-		Sama_2502	0.36	+0.4
3,004,235	-		Sama_2502	0.36	+0.7
3,004,235	-		Sama_2502	0.36	+0.1
3,004,394	-		Sama_2502	0.44	+0.0
3,004,419	+		Sama_2502	0.45	+0.8
3,004,419	+		Sama_2502	0.45	-1.2
3,004,424	-		Sama_2502	0.45	-1.2
3,004,424	-		Sama_2502	0.45	+0.9
3,004,429	+		Sama_2502	0.46	+2.4
3,004,430	-		Sama_2502	0.46	-1.2
3,004,430	-		Sama_2502	0.46	-0.2
3,004,430	-		Sama_2502	0.46	+0.8
3,004,430	-		Sama_2502	0.46	+0.8
3,004,430	-		Sama_2502	0.46	-2.1
3,004,493	+		Sama_2502	0.49	-1.0
3,004,493	+		Sama_2502	0.49	+0.8
3,004,494	-		Sama_2502	0.49	+0.9
3,004,494	-		Sama_2502	0.49	-1.2
3,004,528	+		Sama_2502	0.51	+0.2
3,004,528	+		Sama_2502	0.51	-0.5
3,004,529	-		Sama_2502	0.51	-1.0
3,004,529	-		Sama_2502	0.51	-0.4
3,004,543	+		Sama_2502	0.51	+1.4
3,004,543	+		Sama_2502	0.51	-0.2
3,004,544	-		Sama_2502	0.52	+1.9
3,004,544	-		Sama_2502	0.52	-1.0
3,004,544	-		Sama_2502	0.52	-1.2
3,004,558	+		Sama_2502	0.52	-0.6
3,004,559	-		Sama_2502	0.52	+0.6
3,004,578	-		Sama_2502	0.53	+1.7
3,004,578	-		Sama_2502	0.53	+2.7
3,004,598	-		Sama_2502	0.54	+0.4
3,004,667	-		Sama_2502	0.58	-2.0
3,004,667	-		Sama_2502	0.58	-1.8
3,004,667	-		Sama_2502	0.58	+1.8
3,004,671	+		Sama_2502	0.58	-1.2
3,004,671	+		Sama_2502	0.58	+0.4
3,004,672	-		Sama_2502	0.58	-2.0
3,004,672	-		Sama_2502	0.58	-1.4
3,004,672	-		Sama_2502	0.58	-0.2
3,004,682	+		Sama_2502	0.59	-0.8
3,004,682	+		Sama_2502	0.59	+1.2
3,004,683	-		Sama_2502	0.59	-1.0
3,004,703	+		Sama_2502	0.60	+0.9
3,004,704	-		Sama_2502	0.60	-0.1
3,004,704	-		Sama_2502	0.60	-0.8
3,004,704	-		Sama_2502	0.60	-0.1
3,004,704	-		Sama_2502	0.60	-0.1
3,004,705	+		Sama_2502	0.60	+1.2
3,004,705	+		Sama_2502	0.60	+1.4
3,004,705	+		Sama_2502	0.60	-0.2
3,004,706	-		Sama_2502	0.60	-0.4
3,004,706	-		Sama_2502	0.60	-1.0
3,004,706	-		Sama_2502	0.60	+2.5
3,004,706	-		Sama_2502	0.60	+0.9
3,004,748	-		Sama_2502	0.62	-0.2
3,004,748	-		Sama_2502	0.62	+0.5
3,004,801	+		Sama_2502	0.65	-0.9
3,004,801	+		Sama_2502	0.65	+0.4
3,004,801	+		Sama_2502	0.65	-1.2
3,004,801	+		Sama_2502	0.65	+0.9
3,004,802	-		Sama_2502	0.65	+1.6
3,004,856	-		Sama_2502	0.68	-1.0
3,004,856	-		Sama_2502	0.68	-1.0
3,004,897	+		Sama_2502	0.70	+0.7
3,004,898	-		Sama_2502	0.70	+1.0
3,004,898	-		Sama_2502	0.70	+3.5
3,004,898	-		Sama_2502	0.70	+1.0
3,004,898	-		Sama_2502	0.70	+0.8
3,004,898	-		Sama_2502	0.70	+1.9
3,004,899	+		Sama_2502	0.70	-2.8
3,004,899	+		Sama_2502	0.70	+1.7
3,004,899	+		Sama_2502	0.70	-0.6
3,004,899	+		Sama_2502	0.70	+0.6
3,004,900	-		Sama_2502	0.70	+0.5
3,004,900	-		Sama_2502	0.70	-0.5
3,004,900	-		Sama_2502	0.70	-0.6
3,004,900	-		Sama_2502	0.70	-1.6
3,004,900	-		Sama_2502	0.70	-0.1
3,004,900	-		Sama_2502	0.70	-0.2
3,004,933	-		Sama_2502	0.71	-0.2
3,004,937	+		Sama_2502	0.72	+1.4
3,005,011	-		Sama_2502	0.75	+1.0
3,005,011	-		Sama_2502	0.75	-0.2
3,005,011	-		Sama_2502	0.75	-0.5
3,005,011	-		Sama_2502	0.75	-1.2
3,005,021	-		Sama_2502	0.76	+0.9
3,005,133	+		Sama_2502	0.82	-1.2
3,005,134	-		Sama_2502	0.82	-1.5
3,005,134	-		Sama_2502	0.82	+2.0
3,005,170	+		Sama_2502	0.84	+0.3
3,005,171	-		Sama_2502	0.84	-0.1
3,005,209	+		Sama_2502	0.86	+1.4
3,005,209	+		Sama_2502	0.86	-0.8
3,005,210	-		Sama_2502	0.86	+1.6
3,005,212	+		Sama_2502	0.86	-1.2
3,005,212	+		Sama_2502	0.86	-0.2
3,005,213	-		Sama_2502	0.86	+1.1
3,005,222	-		Sama_2502	0.86	-2.0
3,005,222	-		Sama_2502	0.86	-1.3
3,005,233	+		Sama_2502	0.87	-0.2
3,005,253	+		Sama_2502	0.88	+0.2
3,005,254	-		Sama_2502	0.88	-1.4
3,005,254	-		Sama_2502	0.88	-0.1
3,005,265	+		Sama_2502	0.89	-1.3
3,005,275	+		Sama_2502	0.89	-1.1
3,005,275	+		Sama_2502	0.89	-0.3
3,005,276	-		Sama_2502	0.89	-0.3
3,005,281	-		Sama_2502	0.89	+0.9
3,005,344	+				+0.8
3,005,344	+				+0.1
3,005,369	-				-0.6
3,005,423	+				+0.4
3,005,423	+				+0.1
3,005,423	+				-0.1
3,005,423	+				-1.0
3,005,451	+				-1.0
3,005,452	-				-0.2
3,005,452	-				+2.5
3,005,452	-				-1.2
3,005,455	-				+1.6
3,005,468	+				+1.4
3,005,469	-				+0.5
3,005,488	+				+0.4
3,005,489	-				-1.0
3,005,489	-				-1.6
3,005,630	+				+0.1
3,005,631	-				+0.4
3,005,669	-				+2.0
3,005,672	+				-1.0
3,005,672	+				-0.2
3,005,673	-				+0.0
3,005,673	-				+1.7
3,005,673	-				+2.6
3,005,705	-				+2.2
3,005,727	+				+2.0
3,005,727	+				+0.9
3,005,727	+				+0.2
3,005,727	+				-0.4
3,005,727	+				-1.6
3,005,727	+				-0.2
3,005,728	-				+1.7
3,005,728	-				+0.0
3,005,728	-				-1.6
3,005,728	-				+0.8
3,005,728	-				-1.5
3,005,773	+				+0.2
3,005,773	+				+1.9
3,005,773	+				+0.9
3,005,773	+				+0.9
3,005,773	+				+1.4
3,005,774	-				-2.0
3,005,774	-				-1.8
3,005,774	-				-1.1
3,005,774	-				-0.8
3,005,774	-				-2.0
3,005,774	-				+3.8
3,005,820	+				-0.1
3,005,821	-				+0.1
3,005,832	-				+2.4
3,005,832	-				+0.8
3,005,847	+				+1.0
3,005,851	+				-1.1
3,005,851	+				-2.0
3,005,851	+				+1.2
3,005,852	-				-0.9
3,005,870	+				+0.7
3,005,921	+				+2.5
3,005,921	+				+0.1
3,006,003	+				-1.2
3,006,004	-				-3.0
3,006,004	-				-2.8
3,006,004	-				-0.6
3,006,039	-				-1.6
3,006,039	-				-2.2
3,006,051	-				-2.2
3,006,118	+				-1.0
3,006,119	-				-1.2
3,006,119	-				-2.9
3,006,119	-				-2.4
3,006,119	-				-1.2
3,006,119	-				-0.6
3,006,122	+				-1.8
3,006,122	+				-1.6
3,006,123	-				-0.2
3,006,123	-				-1.6
3,006,123	-				-5.2
3,006,123	-				-2.0
3,006,128	+				-1.6
3,006,128	+				-1.8
3,006,129	-				+0.1
3,006,238	-				-2.4
3,006,307	-	carB	Sama_2503	0.12	-2.2
3,006,351	+	carB	Sama_2503	0.13	-2.3
3,006,351	+	carB	Sama_2503	0.13	-1.2
3,006,352	-	carB	Sama_2503	0.13	-2.1
3,006,375	-	carB	Sama_2503	0.14	-2.2
3,006,406	+	carB	Sama_2503	0.15	-0.6
3,006,407	-	carB	Sama_2503	0.15	-2.1
3,006,407	-	carB	Sama_2503	0.15	-1.0