Strain Fitness in Shewanella amazonensis SB2B around Sama_2036

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
2,472,498	+		Sama_2034	0.86	-1.7
2,472,499	-		Sama_2034	0.86	-1.2
2,472,548	+				+0.5
2,472,549	-				+0.2
2,472,581	+				+1.3
2,472,582	-				-1.2
2,472,608	+				+1.7
2,472,608	+				-1.2
2,472,686	-				+0.3
2,472,688	+				+0.2
2,472,688	+				-0.5
2,472,688	+				+1.1
2,472,688	+				+0.6
2,472,688	+				-0.0
2,472,689	-				-1.9
2,472,689	-				-1.7
2,472,689	-				-0.3
2,472,689	-				+4.4
2,472,692	+				+0.9
2,472,692	+				+0.8
2,472,692	+				+0.5
2,472,692	+				-1.3
2,472,693	-				+1.4
2,472,693	-				+0.9
2,472,693	-				-1.4
2,472,693	-				-0.2
2,472,727	-				+0.3
2,472,750	-				-0.2
2,472,806	-		Sama_2035	0.14	+0.7
2,472,806	-		Sama_2035	0.14	-0.7
2,472,858	+		Sama_2035	0.24	+1.0
2,472,858	+		Sama_2035	0.24	+0.5
2,472,858	+		Sama_2035	0.24	+1.4
2,472,858	+		Sama_2035	0.24	+0.4
2,472,858	+		Sama_2035	0.24	+1.6
2,472,858	+		Sama_2035	0.24	+0.5
2,472,859	-		Sama_2035	0.24	+0.7
2,472,859	-		Sama_2035	0.24	+1.2
2,472,859	-		Sama_2035	0.24	+0.7
2,472,859	-		Sama_2035	0.24	+1.2
2,472,859	-		Sama_2035	0.24	+0.7
2,472,864	-		Sama_2035	0.25	+0.1
2,472,883	-		Sama_2035	0.28	-2.2
2,472,939	-		Sama_2035	0.38	+0.9
2,472,947	+		Sama_2035	0.40	+1.5
2,472,963	-		Sama_2035	0.43	+0.2
2,473,047	+		Sama_2035	0.58	-0.2
2,473,047	+		Sama_2035	0.58	+1.2
2,473,055	+		Sama_2035	0.59	+2.8
2,473,146	+		Sama_2035	0.75	-1.7
2,473,147	-		Sama_2035	0.76	+0.5
2,473,163	+		Sama_2035	0.79	-2.8
2,473,163	+		Sama_2035	0.79	+1.4
2,473,184	+		Sama_2035	0.82	-0.8
2,473,184	+		Sama_2035	0.82	-0.1
2,473,185	-		Sama_2035	0.83	+0.3
2,473,185	-		Sama_2035	0.83	+1.2
2,473,185	-		Sama_2035	0.83	-1.2
2,473,185	-		Sama_2035	0.83	+1.9
2,473,202	+		Sama_2035	0.86	+0.5
2,473,203	-		Sama_2035	0.86	+1.7
2,473,203	-		Sama_2035	0.86	-3.1
2,473,206	+		Sama_2035	0.86	-0.3
2,473,206	+		Sama_2035	0.86	-2.5
2,473,206	+		Sama_2035	0.86	-0.7
2,473,206	+		Sama_2035	0.86	-0.3
2,473,206	+		Sama_2035	0.86	+2.6
2,473,206	+		Sama_2035	0.86	+0.9
2,473,207	-		Sama_2035	0.86	-2.4
2,473,207	-		Sama_2035	0.86	-0.7
2,473,207	-		Sama_2035	0.86	-1.5
2,473,207	-		Sama_2035	0.86	-1.8
2,473,219	+		Sama_2035	0.89	+0.3
2,473,266	+				+2.0
2,473,303	+				+0.9
2,473,303	+				+1.5
2,473,303	+				-1.3
2,473,303	+				+0.2
2,473,303	+				+3.5
2,473,303	+				+1.5
2,473,304	-				+2.1
2,473,304	-				-0.1
2,473,314	-				+1.3
2,473,314	-				-1.0
2,473,397	+				+0.9
2,473,397	+				+0.9
2,473,398	-				-0.8
2,473,398	-				-0.3
2,473,402	+				-1.9
2,473,402	+				-0.7
2,473,403	-				-1.2
2,473,423	+				-0.1
2,473,432	+		Sama_2036	0.11	+2.2
2,473,432	+		Sama_2036	0.11	-0.1
2,473,432	+		Sama_2036	0.11	+0.2
2,473,433	-		Sama_2036	0.11	+0.2
2,473,453	+		Sama_2036	0.14	+0.8
2,473,454	-		Sama_2036	0.14	-1.5
2,473,454	-		Sama_2036	0.14	-1.2
2,473,498	+		Sama_2036	0.21	+0.9
2,473,499	-		Sama_2036	0.21	+0.6
2,473,499	-		Sama_2036	0.21	-1.3
2,473,672	+		Sama_2036	0.48	-0.4
2,473,682	+		Sama_2036	0.50	+2.0
2,473,682	+		Sama_2036	0.50	-0.7
2,473,683	-		Sama_2036	0.50	-0.0
2,473,770	+		Sama_2036	0.63	+1.7
2,473,771	-		Sama_2036	0.63	+3.0
2,473,828	+		Sama_2036	0.72	+2.2
2,473,835	+		Sama_2036	0.73	+0.1
2,473,835	+		Sama_2036	0.73	+2.7
2,473,848	+		Sama_2036	0.75	-0.8
2,473,881	+		Sama_2036	0.80	+1.2
2,473,881	+		Sama_2036	0.80	-1.2
2,473,881	+		Sama_2036	0.80	-2.2
2,473,881	+		Sama_2036	0.80	-0.4
2,473,881	+		Sama_2036	0.80	+0.7
2,473,881	+		Sama_2036	0.80	+0.7
2,473,881	+		Sama_2036	0.80	+0.8
2,473,882	-		Sama_2036	0.80	+0.6
2,473,882	-		Sama_2036	0.80	+1.9
2,473,882	-		Sama_2036	0.80	+0.2
2,473,882	-		Sama_2036	0.80	-0.3
2,473,883	+		Sama_2036	0.81	-0.4
2,473,883	+		Sama_2036	0.81	-1.4
2,473,883	+		Sama_2036	0.81	-0.6
2,473,883	+		Sama_2036	0.81	+0.4
2,473,883	+		Sama_2036	0.81	+2.5
2,473,883	+		Sama_2036	0.81	+0.2
2,473,883	+		Sama_2036	0.81	+0.6
2,473,883	+		Sama_2036	0.81	+1.2
2,473,883	+		Sama_2036	0.81	-0.8
2,473,884	-		Sama_2036	0.81	-1.2
2,473,884	-		Sama_2036	0.81	+2.2
2,473,884	-		Sama_2036	0.81	+0.2
2,473,884	-		Sama_2036	0.81	-0.6
2,473,884	-		Sama_2036	0.81	-0.4
2,473,884	-		Sama_2036	0.81	-1.5
2,473,884	-		Sama_2036	0.81	-0.6
2,473,884	-		Sama_2036	0.81	+0.8
2,474,006	+				-2.4
2,474,200	+		Sama_2037	0.25	-1.8
2,474,207	+		Sama_2037	0.26	-2.8
2,474,321	+		Sama_2037	0.41	-2.6
2,474,353	+		Sama_2037	0.45	-1.4
2,474,409	+		Sama_2037	0.52	-1.2
2,474,474	+		Sama_2037	0.60	-2.6
2,474,474	+		Sama_2037	0.60	-2.3
2,474,485	+		Sama_2037	0.61	-1.8
2,474,576	+		Sama_2037	0.73	-2.2
2,474,576	+		Sama_2037	0.73	-1.4
2,474,634	+		Sama_2037	0.80	-3.0
2,474,651	+		Sama_2037	0.82	+0.2
2,474,770	+				+0.7
2,474,784	+				+0.2
2,474,784	+				-2.0
2,474,785	-				-1.2
2,474,791	-				+1.6
2,474,804	+				+0.6
2,474,804	+				+2.5
2,474,820	+				+0.2
2,474,820	+				+1.3
2,474,821	-				+4.9
2,474,821	-				-0.3
2,474,842	+				-2.6
2,474,868	+				+0.3
2,474,869	-				-2.0
2,474,950	-				+0.5
2,474,974	-				-0.8
2,474,974	-				-0.1
2,474,988	+		Sama_2038	0.10	+0.4
2,474,988	+		Sama_2038	0.10	+0.2
2,474,988	+		Sama_2038	0.10	+1.0
2,474,989	-		Sama_2038	0.10	-0.8
2,474,989	-		Sama_2038	0.10	-0.8