Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1776 and Sama_1777 are separated by 27 nucleotides Sama_1777 and Sama_1778 are separated by 56 nucleotides Sama_1778 and Sama_1779 overlap by 7 nucleotides Sama_1779 and Sama_1780 overlap by 1 nucleotides
Sama_1776: Sama_1776 - seryl-tRNA synthetase (RefSeq), at 2,171,156 to 2,172,442
_1776
Sama_1777: Sama_1777 - hypothetical protein (RefSeq), at 2,172,470 to 2,172,589
_1777
Sama_1778: Sama_1778 - DsrC-like protein (RefSeq), at 2,172,646 to 2,172,984
_1778
Sama_1779: Sama_1779 - putative uncharacterized protein involved in oxidation of intracellular sulfur (RefSeq), at 2,172,978 to 2,173,271
_1779
Sama_1780: Sama_1780 - putative uncharacterized protein involved in oxidation of intracellular sulfur (RefSeq), at 2,173,271 to 2,173,627
_1780
Position (kb)
2172
2173 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2172.443 kb on + strand at 2172.467 kb on + strand at 2172.467 kb on + strand at 2172.467 kb on + strand at 2172.469 kb on + strand at 2172.469 kb on + strand at 2172.492 kb on + strand, within Sama_1777 at 2172.506 kb on + strand, within Sama_1777 at 2172.506 kb on + strand, within Sama_1777 at 2172.547 kb on + strand, within Sama_1777 at 2172.547 kb on + strand, within Sama_1777 at 2172.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 2,172,443 + -1.8 2,172,467 + -1.0 2,172,467 + -0.4 2,172,467 + -1.3 2,172,469 + +3.7 2,172,469 + -3.1 2,172,492 + Sama_1777 0.18 +2.1 2,172,506 + Sama_1777 0.30 +0.8 2,172,506 + Sama_1777 0.30 -0.0 2,172,547 + Sama_1777 0.64 -1.3 2,172,547 + Sama_1777 0.64 -1.7 2,172,580 + +1.0
Or see this region's nucleotide sequence