Strain Fitness in Shewanella amazonensis SB2B around Sama_1533

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
1,862,784	+				-0.0
1,862,861	-		Sama_1532	0.17	+0.2
1,862,905	+		Sama_1532	0.21	+0.8
1,862,905	+		Sama_1532	0.21	-1.0
1,862,905	+		Sama_1532	0.21	-3.0
1,862,905	+		Sama_1532	0.21	-1.6
1,862,905	+		Sama_1532	0.21	-3.8
1,862,906	-		Sama_1532	0.21	+0.9
1,862,906	-		Sama_1532	0.21	+0.3
1,862,906	-		Sama_1532	0.21	+1.0
1,862,978	-		Sama_1532	0.28	-0.3
1,863,002	+		Sama_1532	0.30	+0.3
1,863,068	+		Sama_1532	0.36	+1.4
1,863,068	+		Sama_1532	0.36	+0.5
1,863,074	+		Sama_1532	0.37	-1.0
1,863,074	+		Sama_1532	0.37	+1.2
1,863,075	-		Sama_1532	0.37	+0.5
1,863,075	-		Sama_1532	0.37	-0.2
1,863,075	-		Sama_1532	0.37	+2.0
1,863,180	-		Sama_1532	0.47	-0.3
1,863,200	+		Sama_1532	0.49	+0.7
1,863,200	+		Sama_1532	0.49	-3.3
1,863,200	+		Sama_1532	0.49	-0.6
1,863,200	+		Sama_1532	0.49	+1.0
1,863,201	-		Sama_1532	0.49	-1.6
1,863,201	-		Sama_1532	0.49	-0.7
1,863,201	-		Sama_1532	0.49	+1.9
1,863,201	-		Sama_1532	0.49	-0.0
1,863,201	-		Sama_1532	0.49	+0.4
1,863,238	+		Sama_1532	0.53	-2.6
1,863,238	+		Sama_1532	0.53	-0.3
1,863,238	+		Sama_1532	0.53	+1.4
1,863,238	+		Sama_1532	0.53	-2.2
1,863,242	-		Sama_1532	0.53	+0.3
1,863,247	+		Sama_1532	0.54	-1.8
1,863,247	+		Sama_1532	0.54	-2.2
1,863,247	+		Sama_1532	0.54	+0.7
1,863,247	+		Sama_1532	0.54	+1.0
1,863,248	-		Sama_1532	0.54	-1.6
1,863,248	-		Sama_1532	0.54	+3.8
1,863,248	-		Sama_1532	0.54	+0.3
1,863,248	-		Sama_1532	0.54	+0.6
1,863,248	-		Sama_1532	0.54	-1.0
1,863,386	+		Sama_1532	0.67	+0.1
1,863,387	-		Sama_1532	0.67	-0.3
1,863,389	-		Sama_1532	0.67	+1.8
1,863,402	+		Sama_1532	0.68	-2.3
1,863,402	+		Sama_1532	0.68	+3.9
1,863,414	+		Sama_1532	0.70	-0.1
1,863,415	-		Sama_1532	0.70	-1.1
1,863,634	-				+1.6
1,863,634	-				+1.5
1,863,634	-				+1.6
1,863,634	-				+1.5
1,863,661	-				-1.0
1,863,661	-				-0.3
1,863,661	-				-1.0
1,863,699	+				-0.0
1,863,700	-				+1.6
1,863,748	+				+1.7
1,863,749	-				-1.3
1,863,749	-				+0.1
1,863,763	-				+3.3
1,863,763	-				-1.6
1,863,801	+				-0.0
1,863,802	-				+2.1
1,863,807	+				-2.0
1,863,807	+				+1.2
1,863,807	+				+0.7
1,863,808	-				-2.2
1,863,808	-				-2.9
1,863,841	+				-1.6
1,863,842	-				-2.6
1,863,862	+				-0.0
1,863,863	-				+0.2
1,863,876	+		Sama_1533	0.11	+1.3
1,863,876	+		Sama_1533	0.11	-1.3
1,863,877	-		Sama_1533	0.11	-1.3
1,863,942	+		Sama_1533	0.16	+0.6
1,863,942	+		Sama_1533	0.16	-0.7
1,863,942	+		Sama_1533	0.16	+0.1
1,863,943	-		Sama_1533	0.16	+0.5
1,864,028	+		Sama_1533	0.22	+0.7
1,864,028	+		Sama_1533	0.22	-2.2
1,864,028	+		Sama_1533	0.22	+0.3
1,864,068	+		Sama_1533	0.25	+1.6
1,864,072	+		Sama_1533	0.26	-0.2
1,864,072	+		Sama_1533	0.26	+0.6
1,864,072	+		Sama_1533	0.26	-0.6
1,864,072	+		Sama_1533	0.26	+1.3
1,864,072	+		Sama_1533	0.26	+1.7
1,864,072	+		Sama_1533	0.26	+1.1
1,864,072	+		Sama_1533	0.26	-0.3
1,864,072	+		Sama_1533	0.26	+0.2
1,864,073	-		Sama_1533	0.26	+0.1
1,864,073	-		Sama_1533	0.26	+1.7
1,864,073	-		Sama_1533	0.26	-0.6
1,864,096	+		Sama_1533	0.28	-0.3
1,864,097	-		Sama_1533	0.28	-0.6
1,864,097	-		Sama_1533	0.28	+1.5
1,864,102	+		Sama_1533	0.28	+0.9
1,864,111	+		Sama_1533	0.29	+0.9
1,864,111	+		Sama_1533	0.29	-1.1
1,864,200	+		Sama_1533	0.36	+1.5
1,864,206	+		Sama_1533	0.36	+1.3
1,864,232	-		Sama_1533	0.38	-0.3
1,864,232	-		Sama_1533	0.38	-1.2
1,864,232	-		Sama_1533	0.38	-0.6
1,864,232	-		Sama_1533	0.38	-0.7
1,864,253	+		Sama_1533	0.40	-0.2
1,864,282	-		Sama_1533	0.42	-0.3
1,864,284	+		Sama_1533	0.42	+0.4
1,864,284	+		Sama_1533	0.42	-1.6
1,864,284	+		Sama_1533	0.42	+1.8
1,864,284	+		Sama_1533	0.42	-0.0
1,864,284	+		Sama_1533	0.42	+1.3
1,864,320	+		Sama_1533	0.45	+0.4
1,864,321	-		Sama_1533	0.45	+2.2
1,864,330	+		Sama_1533	0.46	-0.3
1,864,331	-		Sama_1533	0.46	+0.6
1,864,331	-		Sama_1533	0.46	-0.0
1,864,366	+		Sama_1533	0.49	+1.0
1,864,367	-		Sama_1533	0.49	+1.0
1,864,384	+		Sama_1533	0.50	-2.7
1,864,385	-		Sama_1533	0.50	+1.0
1,864,455	+		Sama_1533	0.56	-1.0
1,864,455	+		Sama_1533	0.56	-0.5
1,864,455	+		Sama_1533	0.56	+2.0
1,864,456	-		Sama_1533	0.56	+0.7
1,864,456	-		Sama_1533	0.56	-1.8
1,864,479	+		Sama_1533	0.57	+1.2
1,864,649	+		Sama_1533	0.71	+1.0
1,864,650	-		Sama_1533	0.71	-0.0
1,864,668	+		Sama_1533	0.72	+1.1
1,864,687	+		Sama_1533	0.74	-0.6
1,864,687	+		Sama_1533	0.74	+1.5
1,864,687	+		Sama_1533	0.74	+0.8
1,864,783	-		Sama_1533	0.81	-1.1
1,864,819	+		Sama_1533	0.84	+2.8
1,864,819	+		Sama_1533	0.84	-1.6
1,864,819	+		Sama_1533	0.84	-2.5
1,864,820	-		Sama_1533	0.84	+0.5
1,864,968	+				-0.6
1,864,968	+				-1.8
1,864,968	+				+0.4
1,864,969	-				-2.2
1,865,003	+				-0.9
1,865,003	+				+1.1
1,865,003	+				+0.4
1,865,004	-				+0.9
1,865,046	-				+0.7
1,865,105	+				-0.2
1,865,105	+				-0.2
1,865,106	-				+3.0
1,865,106	-				+0.2
1,865,106	-				-1.3
1,865,109	+				-1.0
1,865,109	+				-2.0
1,865,110	-				+2.4
1,865,110	-				+0.4
1,865,113	+				+0.6
1,865,114	-				+0.4
1,865,136	-				+0.4
1,865,136	-				-2.0
1,865,136	-				-0.0
1,865,136	-				+0.2
1,865,201	-				-0.2
1,865,244	-		Sama_1534	0.10	-0.5
1,865,244	-		Sama_1534	0.10	-0.9
1,865,268	+		Sama_1534	0.12	+0.4
1,865,268	+		Sama_1534	0.12	-0.0
1,865,268	+		Sama_1534	0.12	+1.6
1,865,268	+		Sama_1534	0.12	-1.0
1,865,269	-		Sama_1534	0.12	+1.1
1,865,269	-		Sama_1534	0.12	+0.2
1,865,269	-		Sama_1534	0.12	+0.5
1,865,269	-		Sama_1534	0.12	-1.0
1,865,269	-		Sama_1534	0.12	-2.0
1,865,269	-		Sama_1534	0.12	+0.2
1,865,269	-		Sama_1534	0.12	-1.2
1,865,269	-		Sama_1534	0.12	-1.1
1,865,269	-		Sama_1534	0.12	-1.2
1,865,269	-		Sama_1534	0.12	+1.0
1,865,269	-		Sama_1534	0.12	-1.6
1,865,269	-		Sama_1534	0.12	+1.2
1,865,269	-		Sama_1534	0.12	-3.0
1,865,269	-		Sama_1534	0.12	-0.3
1,865,282	+		Sama_1534	0.13	-3.3
1,865,287	+		Sama_1534	0.13	+0.5
1,865,288	-		Sama_1534	0.14	-0.2
1,865,309	+		Sama_1534	0.15	+0.5
1,865,310	-		Sama_1534	0.15	+0.5
1,865,338	-		Sama_1534	0.17	-1.5
1,865,383	+		Sama_1534	0.21	-1.1
1,865,383	+		Sama_1534	0.21	-0.0
1,865,383	+		Sama_1534	0.21	-0.2
1,865,383	+		Sama_1534	0.21	+0.8
1,865,384	-		Sama_1534	0.21	-0.5
1,865,384	-		Sama_1534	0.21	-1.9
1,865,384	-		Sama_1534	0.21	-1.0
1,865,384	-		Sama_1534	0.21	-1.0
1,865,384	-		Sama_1534	0.21	+0.6
1,865,393	-		Sama_1534	0.21	-0.8
1,865,393	-		Sama_1534	0.21	-0.4
1,865,403	+		Sama_1534	0.22	+2.2
1,865,403	+		Sama_1534	0.22	+1.0
1,865,404	-		Sama_1534	0.22	+4.2
1,865,404	-		Sama_1534	0.22	+0.6
1,865,404	-		Sama_1534	0.22	-1.9
1,865,420	+		Sama_1534	0.24	+4.1
1,865,420	+		Sama_1534	0.24	+1.0
1,865,421	-		Sama_1534	0.24	+0.2
1,865,444	+		Sama_1534	0.25	-3.2
1,865,444	+		Sama_1534	0.25	+0.3
1,865,445	-		Sama_1534	0.25	+0.5
1,865,458	+		Sama_1534	0.26	-1.8
1,865,459	-		Sama_1534	0.26	-0.6
1,865,459	-		Sama_1534	0.26	-0.8
1,865,459	-		Sama_1534	0.26	-0.5
1,865,459	-		Sama_1534	0.26	-1.1
1,865,494	-		Sama_1534	0.29	+1.5
1,865,523	-		Sama_1534	0.31	-0.0
1,865,555	+		Sama_1534	0.34	-2.6
1,865,555	+		Sama_1534	0.34	-0.6
1,865,556	-		Sama_1534	0.34	+1.6
1,865,556	-		Sama_1534	0.34	-0.6
1,865,556	-		Sama_1534	0.34	+0.3
1,865,556	-		Sama_1534	0.34	+1.1
1,865,556	-		Sama_1534	0.34	-2.5
1,865,631	+		Sama_1534	0.39	-1.8
1,865,631	+		Sama_1534	0.39	+1.0
1,865,631	+		Sama_1534	0.39	-0.6
1,865,631	+		Sama_1534	0.39	-1.5
1,865,631	+		Sama_1534	0.39	+0.3
1,865,632	-		Sama_1534	0.40	-0.6
1,865,640	+		Sama_1534	0.40	+0.2
1,865,640	+		Sama_1534	0.40	+1.7
1,865,640	+		Sama_1534	0.40	-0.5
1,865,641	-		Sama_1534	0.40	-0.6
1,865,641	-		Sama_1534	0.40	+0.3
1,865,641	-		Sama_1534	0.40	+1.0
1,865,664	-		Sama_1534	0.42	+0.2
1,865,681	-		Sama_1534	0.43	-0.7
1,865,738	+		Sama_1534	0.48	-1.0
1,865,738	+		Sama_1534	0.48	-0.0
1,865,738	+		Sama_1534	0.48	+0.4
1,865,738	+		Sama_1534	0.48	+3.3
1,865,739	-		Sama_1534	0.48	-1.3
1,865,739	-		Sama_1534	0.48	+0.1
1,865,739	-		Sama_1534	0.48	-0.0
1,865,739	-		Sama_1534	0.48	+0.1
1,865,739	-		Sama_1534	0.48	+0.2
1,865,739	-		Sama_1534	0.48	-0.4
1,865,739	-		Sama_1534	0.48	-0.8
1,865,739	-		Sama_1534	0.48	-0.5
1,865,740	+		Sama_1534	0.48	+0.3
1,865,748	+		Sama_1534	0.48	-0.3
1,865,777	+		Sama_1534	0.50	+2.2
1,865,778	-		Sama_1534	0.51	+0.4
1,865,788	+		Sama_1534	0.51	+1.0
1,865,789	-		Sama_1534	0.51	+0.3
1,865,789	-		Sama_1534	0.51	+0.2
1,865,848	+		Sama_1534	0.56	+0.2
1,865,848	+		Sama_1534	0.56	-0.7
1,865,849	-		Sama_1534	0.56	-0.6
1,865,849	-		Sama_1534	0.56	+1.4
1,865,849	-		Sama_1534	0.56	-0.6
1,865,908	+		Sama_1534	0.60	-2.7
1,865,908	+		Sama_1534	0.60	+1.0
1,865,908	+		Sama_1534	0.60	+1.5
1,865,909	-		Sama_1534	0.60	-2.8
1,865,909	-		Sama_1534	0.60	-0.6
1,865,912	+		Sama_1534	0.61	-2.2
1,865,948	+		Sama_1534	0.63	-2.0
1,865,949	-		Sama_1534	0.63	+0.2