Strain Fitness in Shewanella amazonensis SB2B around Sama_0852

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
1,038,466	+				-0.4
1,038,466	+				-0.4
1,038,466	+				-2.0
1,038,466	+				+1.3
1,038,466	+				-1.4
1,038,466	+				+0.4
1,038,467	-				+0.6
1,038,467	-				+1.6
1,038,470	-				+1.1
1,038,487	+				-1.3
1,038,487	+				-0.5
1,038,487	+				-0.6
1,038,488	-				-0.5
1,038,567	+				-0.0
1,038,567	+				+0.2
1,038,568	-				-1.5
1,038,578	+				+2.1
1,038,579	-				+0.0
1,038,579	-				+0.7
1,038,600	+				+0.2
1,038,601	-				+1.4
1,038,661	+		Sama_0851	0.20	-1.1
1,038,661	+		Sama_0851	0.20	+0.9
1,038,661	+		Sama_0851	0.20	+2.8
1,038,662	-		Sama_0851	0.20	+0.0
1,038,662	-		Sama_0851	0.20	-1.3
1,038,677	+		Sama_0851	0.23	+0.8
1,038,677	+		Sama_0851	0.23	+0.2
1,038,677	+		Sama_0851	0.23	+0.5
1,038,678	-		Sama_0851	0.24	-1.7
1,038,678	-		Sama_0851	0.24	+1.2
1,038,678	-		Sama_0851	0.24	+1.5
1,038,678	-		Sama_0851	0.24	+0.3
1,038,732	+		Sama_0851	0.35	+2.5
1,038,733	-		Sama_0851	0.35	+0.7
1,038,733	-		Sama_0851	0.35	-0.8
1,038,768	+		Sama_0851	0.43	+0.3
1,038,768	+		Sama_0851	0.43	-0.1
1,038,768	+		Sama_0851	0.43	-0.6
1,038,768	+		Sama_0851	0.43	-0.6
1,038,768	+		Sama_0851	0.43	+1.9
1,038,768	+		Sama_0851	0.43	+1.0
1,038,768	+		Sama_0851	0.43	-0.4
1,038,769	-		Sama_0851	0.43	+0.6
1,038,769	-		Sama_0851	0.43	+0.7
1,038,769	-		Sama_0851	0.43	+1.9
1,038,769	-		Sama_0851	0.43	-0.8
1,038,769	-		Sama_0851	0.43	+2.2
1,038,769	-		Sama_0851	0.43	-0.1
1,038,769	-		Sama_0851	0.43	+0.1
1,038,769	-		Sama_0851	0.43	-0.8
1,038,792	+		Sama_0851	0.48	+2.8
1,038,793	-		Sama_0851	0.48	+1.5
1,038,793	-		Sama_0851	0.48	-0.8
1,038,835	+		Sama_0851	0.57	-0.2
1,038,835	+		Sama_0851	0.57	-0.5
1,038,852	+		Sama_0851	0.60	+0.0
1,038,852	+		Sama_0851	0.60	+1.6
1,038,852	+		Sama_0851	0.60	-1.0
1,038,853	-		Sama_0851	0.61	+1.4
1,038,853	-		Sama_0851	0.61	+0.5
1,038,853	-		Sama_0851	0.61	+1.5
1,038,897	+		Sama_0851	0.70	-1.2
1,038,897	+		Sama_0851	0.70	+1.0
1,038,898	-		Sama_0851	0.70	-2.0
1,038,898	-		Sama_0851	0.70	+0.5
1,038,898	-		Sama_0851	0.70	+1.2
1,038,898	-		Sama_0851	0.70	-0.2
1,038,898	-		Sama_0851	0.70	+0.4
1,038,900	+		Sama_0851	0.70	-0.5
1,038,900	+		Sama_0851	0.70	-0.7
1,038,900	+		Sama_0851	0.70	-1.1
1,038,901	-		Sama_0851	0.71	+1.6
1,038,918	+		Sama_0851	0.74	-0.1
1,038,919	-		Sama_0851	0.74	+2.5
1,038,919	-		Sama_0851	0.74	-0.1
1,038,944	-		Sama_0851	0.80	-0.2
1,038,944	-		Sama_0851	0.80	-0.5
1,038,945	+		Sama_0851	0.80	-1.1
1,038,945	+		Sama_0851	0.80	-0.1
1,038,945	+		Sama_0851	0.80	+0.4
1,038,945	+		Sama_0851	0.80	+3.0
1,038,946	-		Sama_0851	0.80	-0.5
1,038,946	-		Sama_0851	0.80	-0.6
1,038,946	-		Sama_0851	0.80	-2.1
1,038,946	-		Sama_0851	0.80	+0.5
1,038,946	-		Sama_0851	0.80	-0.5
1,038,946	-		Sama_0851	0.80	+2.6
1,038,950	+		Sama_0851	0.81	-1.5
1,038,950	+		Sama_0851	0.81	-0.3
1,038,950	+		Sama_0851	0.81	+0.1
1,038,951	-		Sama_0851	0.81	-1.7
1,039,014	+				+1.6
1,039,014	+				-0.3
1,039,015	-				-0.1
1,039,022	+				+0.9
1,039,022	+				+0.3
1,039,130	-		Sama_0852	0.14	+0.9
1,039,163	+		Sama_0852	0.19	+1.5
1,039,163	+		Sama_0852	0.19	-1.8
1,039,164	-		Sama_0852	0.19	+0.3
1,039,164	-		Sama_0852	0.19	+1.0
1,039,164	-		Sama_0852	0.19	+0.9
1,039,164	-		Sama_0852	0.19	-2.2
1,039,164	-		Sama_0852	0.19	+0.6
1,039,180	+		Sama_0852	0.22	-2.0
1,039,182	+		Sama_0852	0.22	+1.0
1,039,183	-		Sama_0852	0.22	+0.8
1,039,183	-		Sama_0852	0.22	-0.1
1,039,183	-		Sama_0852	0.22	+1.7
1,039,183	-		Sama_0852	0.22	+1.7
1,039,215	+		Sama_0852	0.28	+2.5
1,039,216	-		Sama_0852	0.28	+0.2
1,039,256	+		Sama_0852	0.34	+0.7
1,039,256	+		Sama_0852	0.34	+1.8
1,039,256	+		Sama_0852	0.34	+4.8
1,039,256	+		Sama_0852	0.34	+0.9
1,039,257	-		Sama_0852	0.34	+1.6
1,039,257	-		Sama_0852	0.34	+2.2
1,039,257	-		Sama_0852	0.34	-0.1
1,039,257	-		Sama_0852	0.34	+0.3
1,039,257	-		Sama_0852	0.34	-0.1
1,039,322	-		Sama_0852	0.45	-0.1
1,039,352	+		Sama_0852	0.50	-1.6
1,039,353	-		Sama_0852	0.50	-0.1
1,039,361	-		Sama_0852	0.51	+0.5
1,039,361	-		Sama_0852	0.51	-0.1
1,039,361	-		Sama_0852	0.51	-0.5
1,039,364	+		Sama_0852	0.51	-0.1
1,039,364	+		Sama_0852	0.51	-1.1
1,039,364	+		Sama_0852	0.51	+0.2
1,039,365	-		Sama_0852	0.52	+0.1
1,039,365	-		Sama_0852	0.52	-0.6
1,039,365	-		Sama_0852	0.52	-1.3
1,039,365	-		Sama_0852	0.52	-0.0
1,039,365	-		Sama_0852	0.52	+0.1
1,039,401	+		Sama_0852	0.57	-1.3
1,039,401	+		Sama_0852	0.57	-1.1
1,039,401	+		Sama_0852	0.57	+0.4
1,039,401	+		Sama_0852	0.57	-1.9
1,039,402	-		Sama_0852	0.58	+1.5
1,039,402	-		Sama_0852	0.58	-0.8
1,039,402	-		Sama_0852	0.58	-0.2
1,039,415	-		Sama_0852	0.60	-1.1
1,039,442	-		Sama_0852	0.64	+1.3
1,039,442	-		Sama_0852	0.64	+1.8
1,039,473	+		Sama_0852	0.69	-2.4
1,039,473	+		Sama_0852	0.69	+0.1
1,039,473	+		Sama_0852	0.69	+2.7
1,039,474	-		Sama_0852	0.69	-0.4
1,039,531	+		Sama_0852	0.78	+0.1
1,039,532	-		Sama_0852	0.78	+0.6
1,039,690	-				-1.5
1,039,742	+		Sama_0853	0.20	-2.3
1,039,742	+		Sama_0853	0.20	+0.8
1,039,743	-		Sama_0853	0.21	-1.3
1,039,788	+		Sama_0853	0.32	-0.5
1,039,788	+		Sama_0853	0.32	-0.1
1,039,788	+		Sama_0853	0.32	+0.2
1,039,788	+		Sama_0853	0.32	+1.0
1,039,789	-		Sama_0853	0.32	-1.3
1,039,789	-		Sama_0853	0.32	+0.5
1,039,789	-		Sama_0853	0.32	-2.0
1,039,789	-		Sama_0853	0.32	-0.1
1,039,789	-		Sama_0853	0.32	-1.4
1,039,789	-		Sama_0853	0.32	-1.0
1,039,802	+		Sama_0853	0.36	-1.5
1,039,802	+		Sama_0853	0.36	+1.3
1,039,802	+		Sama_0853	0.36	-1.1
1,039,803	-		Sama_0853	0.36	-0.8
1,039,803	-		Sama_0853	0.36	+0.6
1,039,803	-		Sama_0853	0.36	-2.0
1,039,803	-		Sama_0853	0.36	+0.2
1,039,968	+		Sama_0853	0.78	-1.3
1,039,968	+		Sama_0853	0.78	+0.9
1,039,968	+		Sama_0853	0.78	+0.3
1,039,968	+		Sama_0853	0.78	+0.7
1,039,968	+		Sama_0853	0.78	-0.8
1,039,974	+		Sama_0853	0.80	-0.2
1,039,974	+		Sama_0853	0.80	-0.3
1,039,974	+		Sama_0853	0.80	-1.1
1,039,974	+		Sama_0853	0.80	-2.0
1,039,974	+		Sama_0853	0.80	+0.6
1,039,974	+		Sama_0853	0.80	-1.5
1,039,974	+		Sama_0853	0.80	+0.5
1,039,974	+		Sama_0853	0.80	+1.8
1,039,974	+		Sama_0853	0.80	-0.0
1,039,974	+		Sama_0853	0.80	-0.2
1,039,975	-		Sama_0853	0.80	+0.8
1,039,975	-		Sama_0853	0.80	+0.2
1,039,975	-		Sama_0853	0.80	-0.2
1,039,975	-		Sama_0853	0.80	-3.1
1,039,976	+		Sama_0853	0.80	+1.2
1,039,977	-		Sama_0853	0.81	+2.3
1,039,977	-		Sama_0853	0.81	+0.4
1,039,977	-		Sama_0853	0.81	-0.1
1,040,034	+				-1.3
1,040,034	+				-1.3
1,040,034	+				-0.5
1,040,047	+				-0.6
1,040,047	+				-1.0
1,040,102	+				-1.5
1,040,102	+				+0.9
1,040,102	+				-1.2
1,040,102	+				-1.7
1,040,102	+				-0.2
1,040,102	+				+1.1
1,040,103	-				+0.5
1,040,103	-				-1.3
1,040,104	+				+0.6
1,040,104	+				+0.7
1,040,105	-				+0.8
1,040,105	-				+2.2
1,040,105	-				+0.1
1,040,105	-				-1.1
1,040,105	-				+0.2
1,040,124	+				+1.4
1,040,125	-				-0.5
1,040,140	-				-1.3
1,040,140	-				+0.8
1,040,165	+				+2.3
1,040,165	+				+1.3
1,040,216	+				+1.8
1,040,216	+				-1.3
1,040,265	+		Sama_0854	0.14	+2.2
1,040,266	+		Sama_0854	0.14	+0.7
1,040,266	+		Sama_0854	0.14	+1.5
1,040,266	+		Sama_0854	0.14	-2.3
1,040,266	+		Sama_0854	0.14	-0.2
1,040,266	+		Sama_0854	0.14	-0.3
1,040,267	-		Sama_0854	0.15	+0.4
1,040,270	+		Sama_0854	0.15	-0.1
1,040,270	+		Sama_0854	0.15	+0.4
1,040,270	+		Sama_0854	0.15	-2.7
1,040,270	+		Sama_0854	0.15	+1.0
1,040,270	+		Sama_0854	0.15	-0.0
1,040,271	-		Sama_0854	0.15	+3.1
1,040,292	+		Sama_0854	0.17	+0.4
1,040,293	-		Sama_0854	0.17	+3.5
1,040,293	-		Sama_0854	0.17	-0.3
1,040,340	+		Sama_0854	0.22	-0.1
1,040,340	+		Sama_0854	0.22	+1.8
1,040,340	+		Sama_0854	0.22	+1.2
1,040,340	+		Sama_0854	0.22	+1.4
1,040,340	+		Sama_0854	0.22	+1.5
1,040,340	+		Sama_0854	0.22	+0.6
1,040,341	-		Sama_0854	0.22	+0.5
1,040,341	-		Sama_0854	0.22	-1.7
1,040,341	-		Sama_0854	0.22	-1.7
1,040,341	-		Sama_0854	0.22	-0.8
1,040,398	+		Sama_0854	0.28	-2.3
1,040,457	+		Sama_0854	0.34	+0.2
1,040,457	+		Sama_0854	0.34	+0.7
1,040,457	+		Sama_0854	0.34	+2.6
1,040,458	-		Sama_0854	0.34	-1.5
1,040,478	-		Sama_0854	0.36	+0.6
1,040,478	-		Sama_0854	0.36	-0.1
1,040,616	+		Sama_0854	0.50	-0.1
1,040,616	+		Sama_0854	0.50	+0.7
1,040,616	+		Sama_0854	0.50	-1.5
1,040,617	-		Sama_0854	0.50	-1.2