Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0731 and Sama_0732 overlap by 1 nucleotides Sama_0732 and Sama_0733 are separated by 144 nucleotides Sama_0733 and Sama_0734 are separated by 53 nucleotides
Sama_0731: Sama_0731 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 899,468 to 900,898
_0731
Sama_0732: Sama_0732 - hypothetical protein (RefSeq), at 900,898 to 901,779
_0732
Sama_0733: Sama_0733 - TetR family transcriptional regulator (RefSeq), at 901,924 to 902,412
_0733
Sama_0734: Sama_0734 - hypothetical protein (RefSeq), at 902,466 to 902,732
_0734
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 900.211 kb on + strand, within Sama_0731 at 900.977 kb on + strand at 900.978 kb on - strand at 900.978 kb on - strand at 900.978 kb on - strand at 900.988 kb on - strand, within Sama_0732 at 901.040 kb on + strand, within Sama_0732 at 901.040 kb on + strand, within Sama_0732 at 901.041 kb on - strand, within Sama_0732 at 901.041 kb on - strand, within Sama_0732 at 901.085 kb on + strand, within Sama_0732 at 901.086 kb on - strand, within Sama_0732 at 901.206 kb on + strand, within Sama_0732 at 901.257 kb on - strand, within Sama_0732 at 901.257 kb on - strand, within Sama_0732 at 901.360 kb on + strand, within Sama_0732 at 901.366 kb on + strand, within Sama_0732 at 901.367 kb on - strand, within Sama_0732 at 901.428 kb on + strand, within Sama_0732 at 901.428 kb on + strand, within Sama_0732 at 901.440 kb on + strand, within Sama_0732 at 901.441 kb on - strand, within Sama_0732 at 901.465 kb on - strand, within Sama_0732 at 901.480 kb on + strand, within Sama_0732 at 901.484 kb on + strand, within Sama_0732 at 901.485 kb on - strand, within Sama_0732 at 901.485 kb on - strand, within Sama_0732 at 901.504 kb on + strand, within Sama_0732 at 901.504 kb on + strand, within Sama_0732 at 901.504 kb on + strand, within Sama_0732 at 901.504 kb on + strand, within Sama_0732 at 901.504 kb on + strand, within Sama_0732 at 901.505 kb on - strand, within Sama_0732 at 901.505 kb on - strand, within Sama_0732 at 901.505 kb on - strand, within Sama_0732 at 901.505 kb on - strand, within Sama_0732 at 901.505 kb on - strand, within Sama_0732 at 901.505 kb on - strand, within Sama_0732 at 901.620 kb on + strand, within Sama_0732 at 901.621 kb on - strand, within Sama_0732 at 901.650 kb on + strand, within Sama_0732 at 901.650 kb on + strand, within Sama_0732 at 901.660 kb on + strand, within Sama_0732 at 901.660 kb on + strand, within Sama_0732 at 901.660 kb on + strand, within Sama_0732 at 901.660 kb on + strand, within Sama_0732 at 901.660 kb on + strand, within Sama_0732 at 901.660 kb on + strand, within Sama_0732 at 901.660 kb on + strand, within Sama_0732 at 901.660 kb on + strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.661 kb on - strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.662 kb on + strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.663 kb on - strand, within Sama_0732 at 901.666 kb on + strand, within Sama_0732 at 901.667 kb on - strand, within Sama_0732 at 901.686 kb on - strand, within Sama_0732 at 901.686 kb on - strand, within Sama_0732 at 901.705 kb on - strand at 901.761 kb on + strand at 901.761 kb on + strand at 901.761 kb on + strand at 901.761 kb on + strand at 901.762 kb on - strand at 901.762 kb on - strand at 901.762 kb on - strand at 901.762 kb on - strand at 901.767 kb on - strand at 901.835 kb on - strand at 901.835 kb on - strand at 901.835 kb on - strand at 901.840 kb on + strand at 901.840 kb on + strand at 901.840 kb on + strand at 901.841 kb on - strand at 901.901 kb on + strand at 901.901 kb on + strand at 901.902 kb on - strand at 901.902 kb on - strand at 901.902 kb on - strand at 901.902 kb on - strand at 901.904 kb on - strand at 901.916 kb on + strand at 901.916 kb on + strand at 901.917 kb on - strand at 901.963 kb on - strand at 902.016 kb on + strand, within Sama_0733 at 902.016 kb on + strand, within Sama_0733 at 902.016 kb on + strand, within Sama_0733 at 902.016 kb on + strand, within Sama_0733 at 902.016 kb on + strand, within Sama_0733 at 902.016 kb on + strand, within Sama_0733 at 902.016 kb on + strand, within Sama_0733 at 902.016 kb on + strand, within Sama_0733 at 902.017 kb on - strand, within Sama_0733 at 902.017 kb on - strand, within Sama_0733 at 902.017 kb on - strand, within Sama_0733 at 902.017 kb on - strand, within Sama_0733 at 902.023 kb on + strand, within Sama_0733 at 902.023 kb on + strand, within Sama_0733 at 902.023 kb on + strand, within Sama_0733 at 902.024 kb on - strand, within Sama_0733 at 902.024 kb on - strand, within Sama_0733 at 902.024 kb on - strand, within Sama_0733 at 902.024 kb on - strand, within Sama_0733 at 902.024 kb on - strand, within Sama_0733 at 902.024 kb on - strand, within Sama_0733 at 902.064 kb on + strand, within Sama_0733 at 902.102 kb on + strand, within Sama_0733 at 902.301 kb on + strand, within Sama_0733 at 902.301 kb on + strand, within Sama_0733 at 902.301 kb on + strand, within Sama_0733 at 902.302 kb on - strand, within Sama_0733 at 902.302 kb on - strand, within Sama_0733 at 902.302 kb on - strand, within Sama_0733 at 902.302 kb on - strand, within Sama_0733 at 902.331 kb on + strand, within Sama_0733 at 902.332 kb on - strand, within Sama_0733 at 902.332 kb on - strand, within Sama_0733 at 902.332 kb on - strand, within Sama_0733 at 902.332 kb on - strand, within Sama_0733 at 902.332 kb on - strand, within Sama_0733 at 902.386 kb on - strand at 902.434 kb on + strand at 902.434 kb on + strand at 902.434 kb on + strand at 902.434 kb on + strand at 902.434 kb on + strand at 902.434 kb on + strand at 902.434 kb on + strand at 902.434 kb on + strand at 902.435 kb on - strand at 902.435 kb on - strand at 902.435 kb on - strand at 902.436 kb on + strand at 902.436 kb on + strand at 902.436 kb on + strand at 902.436 kb on + strand at 902.437 kb on - strand at 902.437 kb on - strand at 902.437 kb on - strand at 902.481 kb on + strand at 902.481 kb on + strand at 902.481 kb on + strand at 902.481 kb on + strand at 902.481 kb on + strand at 902.481 kb on + strand at 902.482 kb on - strand at 902.482 kb on - strand at 902.482 kb on - strand at 902.482 kb on - strand at 902.482 kb on - strand at 902.482 kb on - strand at 902.482 kb on - strand at 902.482 kb on - strand at 902.482 kb on - strand at 902.513 kb on + strand, within Sama_0734 at 902.513 kb on + strand, within Sama_0734 at 902.513 kb on + strand, within Sama_0734 at 902.513 kb on + strand, within Sama_0734 at 902.513 kb on + strand, within Sama_0734 at 902.513 kb on + strand, within Sama_0734 at 902.514 kb on - strand, within Sama_0734 at 902.514 kb on - strand, within Sama_0734 at 902.517 kb on + strand, within Sama_0734 at 902.517 kb on + strand, within Sama_0734 at 902.517 kb on + strand, within Sama_0734 at 902.517 kb on + strand, within Sama_0734 at 902.517 kb on + strand, within Sama_0734 at 902.517 kb on + strand, within Sama_0734 at 902.518 kb on - strand, within Sama_0734 at 902.518 kb on - strand, within Sama_0734 at 902.518 kb on - strand, within Sama_0734 at 902.587 kb on - strand, within Sama_0734 at 902.587 kb on - strand, within Sama_0734 at 902.587 kb on - strand, within Sama_0734 at 902.594 kb on - strand, within Sama_0734 at 902.612 kb on + strand, within Sama_0734 at 902.612 kb on + strand, within Sama_0734 at 902.612 kb on + strand, within Sama_0734 at 902.613 kb on - strand, within Sama_0734 at 902.614 kb on + strand, within Sama_0734 at 902.615 kb on - strand, within Sama_0734 at 902.664 kb on - strand, within Sama_0734 at 902.672 kb on + strand, within Sama_0734 at 902.673 kb on - strand, within Sama_0734 at 902.673 kb on - strand, within Sama_0734 at 902.770 kb on + strand at 902.770 kb on + strand at 902.771 kb on - strand at 902.775 kb on + strand at 902.775 kb on + strand at 902.775 kb on + strand at 902.776 kb on - strand at 902.776 kb on - strand at 902.776 kb on - strand at 902.776 kb on - strand at 902.776 kb on - strand at 902.779 kb on + strand at 902.779 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 900,211 + Sama_0731 0.52 +1.0 900,977 + -0.8 900,978 - -2.3 900,978 - -1.9 900,978 - +1.2 900,988 - Sama_0732 0.10 -1.6 901,040 + Sama_0732 0.16 +1.9 901,040 + Sama_0732 0.16 +0.7 901,041 - Sama_0732 0.16 -0.5 901,041 - Sama_0732 0.16 +1.1 901,085 + Sama_0732 0.21 +1.8 901,086 - Sama_0732 0.21 +1.0 901,206 + Sama_0732 0.35 +1.9 901,257 - Sama_0732 0.41 -1.3 901,257 - Sama_0732 0.41 -0.5 901,360 + Sama_0732 0.52 +1.0 901,366 + Sama_0732 0.53 +1.5 901,367 - Sama_0732 0.53 +0.5 901,428 + Sama_0732 0.60 -2.0 901,428 + Sama_0732 0.60 -1.4 901,440 + Sama_0732 0.61 +1.4 901,441 - Sama_0732 0.62 -2.0 901,465 - Sama_0732 0.64 -1.8 901,480 + Sama_0732 0.66 -0.3 901,484 + Sama_0732 0.66 +1.2 901,485 - Sama_0732 0.67 -0.6 901,485 - Sama_0732 0.67 -1.5 901,504 + Sama_0732 0.69 -1.4 901,504 + Sama_0732 0.69 +0.8 901,504 + Sama_0732 0.69 +1.5 901,504 + Sama_0732 0.69 +1.7 901,504 + Sama_0732 0.69 -0.2 901,505 - Sama_0732 0.69 -0.8 901,505 - Sama_0732 0.69 +0.3 901,505 - Sama_0732 0.69 -0.6 901,505 - Sama_0732 0.69 +1.0 901,505 - Sama_0732 0.69 +1.1 901,505 - Sama_0732 0.69 -1.3 901,620 + Sama_0732 0.82 +0.8 901,621 - Sama_0732 0.82 +1.7 901,650 + Sama_0732 0.85 +2.0 901,650 + Sama_0732 0.85 -0.5 901,660 + Sama_0732 0.86 -1.8 901,660 + Sama_0732 0.86 +2.0 901,660 + Sama_0732 0.86 +0.5 901,660 + Sama_0732 0.86 -0.8 901,660 + Sama_0732 0.86 -1.3 901,660 + Sama_0732 0.86 +2.1 901,660 + Sama_0732 0.86 +1.0 901,660 + Sama_0732 0.86 -0.8 901,661 - Sama_0732 0.87 -1.8 901,661 - Sama_0732 0.87 +0.7 901,661 - Sama_0732 0.87 -0.0 901,661 - Sama_0732 0.87 +0.6 901,661 - Sama_0732 0.87 -1.3 901,661 - Sama_0732 0.87 +1.5 901,661 - Sama_0732 0.87 +0.3 901,661 - Sama_0732 0.87 +0.2 901,661 - Sama_0732 0.87 +2.5 901,661 - Sama_0732 0.87 +1.8 901,662 + Sama_0732 0.87 +1.1 901,662 + Sama_0732 0.87 -1.4 901,662 + Sama_0732 0.87 +0.8 901,662 + Sama_0732 0.87 +0.9 901,662 + Sama_0732 0.87 +1.1 901,662 + Sama_0732 0.87 -1.0 901,662 + Sama_0732 0.87 -0.5 901,662 + Sama_0732 0.87 -1.0 901,662 + Sama_0732 0.87 +1.9 901,662 + Sama_0732 0.87 -0.0 901,662 + Sama_0732 0.87 +0.5 901,662 + Sama_0732 0.87 +0.1 901,662 + Sama_0732 0.87 +1.1 901,662 + Sama_0732 0.87 -0.4 901,662 + Sama_0732 0.87 -1.5 901,662 + Sama_0732 0.87 +1.0 901,662 + Sama_0732 0.87 -0.3 901,662 + Sama_0732 0.87 +1.9 901,663 - Sama_0732 0.87 +0.1 901,663 - Sama_0732 0.87 +4.1 901,663 - Sama_0732 0.87 -1.5 901,663 - Sama_0732 0.87 +0.7 901,663 - Sama_0732 0.87 -0.3 901,663 - Sama_0732 0.87 +1.1 901,663 - Sama_0732 0.87 -0.7 901,663 - Sama_0732 0.87 +0.5 901,663 - Sama_0732 0.87 +1.7 901,663 - Sama_0732 0.87 -1.3 901,663 - Sama_0732 0.87 -0.0 901,663 - Sama_0732 0.87 +0.9 901,663 - Sama_0732 0.87 -0.2 901,663 - Sama_0732 0.87 +0.5 901,663 - Sama_0732 0.87 +1.5 901,663 - Sama_0732 0.87 -0.6 901,663 - Sama_0732 0.87 -0.5 901,663 - Sama_0732 0.87 -1.0 901,666 + Sama_0732 0.87 -0.2 901,667 - Sama_0732 0.87 -0.5 901,686 - Sama_0732 0.89 -0.2 901,686 - Sama_0732 0.89 +0.6 901,705 - +0.9 901,761 + +2.1 901,761 + -0.0 901,761 + -1.0 901,761 + +3.4 901,762 - +1.9 901,762 - -0.4 901,762 - +0.8 901,762 - -1.8 901,767 - +0.6 901,835 - +0.7 901,835 - -0.6 901,835 - -1.6 901,840 + +0.2 901,840 + -0.8 901,840 + -1.1 901,841 - -1.0 901,901 + -2.0 901,901 + -0.9 901,902 - +0.1 901,902 - -2.1 901,902 - -0.0 901,902 - -1.9 901,904 - +1.1 901,916 + -0.1 901,916 + -2.3 901,917 - -0.4 901,963 - +0.3 902,016 + Sama_0733 0.19 -1.9 902,016 + Sama_0733 0.19 -1.0 902,016 + Sama_0733 0.19 -0.4 902,016 + Sama_0733 0.19 -1.7 902,016 + Sama_0733 0.19 -0.8 902,016 + Sama_0733 0.19 -1.6 902,016 + Sama_0733 0.19 -1.0 902,016 + Sama_0733 0.19 +0.6 902,017 - Sama_0733 0.19 -3.4 902,017 - Sama_0733 0.19 +0.0 902,017 - Sama_0733 0.19 -1.1 902,017 - Sama_0733 0.19 -0.8 902,023 + Sama_0733 0.20 -1.5 902,023 + Sama_0733 0.20 +0.6 902,023 + Sama_0733 0.20 +0.6 902,024 - Sama_0733 0.20 -0.0 902,024 - Sama_0733 0.20 -1.8 902,024 - Sama_0733 0.20 -1.4 902,024 - Sama_0733 0.20 -0.5 902,024 - Sama_0733 0.20 -2.3 902,024 - Sama_0733 0.20 -1.6 902,064 + Sama_0733 0.29 +1.6 902,102 + Sama_0733 0.36 -2.8 902,301 + Sama_0733 0.77 +1.1 902,301 + Sama_0733 0.77 -1.1 902,301 + Sama_0733 0.77 -2.4 902,302 - Sama_0733 0.77 -3.0 902,302 - Sama_0733 0.77 -3.1 902,302 - Sama_0733 0.77 -1.2 902,302 - Sama_0733 0.77 -2.4 902,331 + Sama_0733 0.83 -0.8 902,332 - Sama_0733 0.83 +0.6 902,332 - Sama_0733 0.83 -3.2 902,332 - Sama_0733 0.83 -2.4 902,332 - Sama_0733 0.83 -1.3 902,332 - Sama_0733 0.83 +0.6 902,386 - -0.4 902,434 + -2.9 902,434 + -0.9 902,434 + -0.8 902,434 + -1.4 902,434 + +1.3 902,434 + +1.7 902,434 + +0.4 902,434 + -2.4 902,435 - +0.9 902,435 - +1.6 902,435 - -2.5 902,436 + +0.0 902,436 + -2.3 902,436 + -0.9 902,436 + +2.3 902,437 - -0.2 902,437 - +1.0 902,437 - +0.8 902,481 + -3.1 902,481 + +0.5 902,481 + -0.4 902,481 + +0.5 902,481 + +0.7 902,481 + +1.7 902,482 - +0.6 902,482 - +0.6 902,482 - +0.1 902,482 - -0.4 902,482 - +4.4 902,482 - +0.8 902,482 - -0.5 902,482 - -0.0 902,482 - -0.8 902,513 + Sama_0734 0.18 +1.6 902,513 + Sama_0734 0.18 +0.4 902,513 + Sama_0734 0.18 -0.0 902,513 + Sama_0734 0.18 +1.5 902,513 + Sama_0734 0.18 -1.0 902,513 + Sama_0734 0.18 -0.8 902,514 - Sama_0734 0.18 -1.6 902,514 - Sama_0734 0.18 +2.0 902,517 + Sama_0734 0.19 +1.0 902,517 + Sama_0734 0.19 +0.2 902,517 + Sama_0734 0.19 +0.2 902,517 + Sama_0734 0.19 +0.6 902,517 + Sama_0734 0.19 -0.9 902,517 + Sama_0734 0.19 -1.3 902,518 - Sama_0734 0.19 -0.6 902,518 - Sama_0734 0.19 +1.6 902,518 - Sama_0734 0.19 +0.7 902,587 - Sama_0734 0.45 -0.2 902,587 - Sama_0734 0.45 -0.3 902,587 - Sama_0734 0.45 +1.8 902,594 - Sama_0734 0.48 -0.4 902,612 + Sama_0734 0.55 -0.0 902,612 + Sama_0734 0.55 +0.4 902,612 + Sama_0734 0.55 -0.6 902,613 - Sama_0734 0.55 -0.9 902,614 + Sama_0734 0.55 -0.4 902,615 - Sama_0734 0.56 -2.0 902,664 - Sama_0734 0.74 +0.4 902,672 + Sama_0734 0.77 +0.2 902,673 - Sama_0734 0.78 +0.6 902,673 - Sama_0734 0.78 +0.6 902,770 + +0.1 902,770 + -0.4 902,771 - +1.7 902,775 + +0.3 902,775 + +0.5 902,775 + -1.0 902,776 - -3.4 902,776 - -2.4 902,776 - -1.2 902,776 - -1.4 902,776 - +0.7 902,779 + -0.9 902,779 + +0.8
Or see this region's nucleotide sequence