Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0641 and Sama_0642 are separated by 145 nucleotides Sama_0642 and Sama_0643 are separated by 141 nucleotides
Sama_0641: Sama_0641 - hypothetical protein (RefSeq), at 796,210 to 797,187
_0641
Sama_0642: Sama_0642 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq), at 797,333 to 798,097
_0642
Sama_0643: Sama_0643 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 798,239 to 799,675
_0643
Position (kb) 797
798
799 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.468 kb on + strand, within Sama_0641 at 796.474 kb on + strand, within Sama_0641 at 796.475 kb on - strand, within Sama_0641 at 796.475 kb on - strand, within Sama_0641 at 796.646 kb on + strand, within Sama_0641 at 796.646 kb on + strand, within Sama_0641 at 796.647 kb on - strand, within Sama_0641 at 796.731 kb on + strand, within Sama_0641 at 796.731 kb on + strand, within Sama_0641 at 796.732 kb on - strand, within Sama_0641 at 796.732 kb on - strand, within Sama_0641 at 796.783 kb on + strand, within Sama_0641 at 796.783 kb on + strand, within Sama_0641 at 796.784 kb on - strand, within Sama_0641 at 796.784 kb on - strand, within Sama_0641 at 796.867 kb on + strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.897 kb on + strand, within Sama_0641 at 796.898 kb on - strand, within Sama_0641 at 796.898 kb on - strand, within Sama_0641 at 797.072 kb on + strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.169 kb on - strand at 797.179 kb on - strand at 797.210 kb on + strand at 797.210 kb on + strand at 797.248 kb on + strand at 797.248 kb on + strand at 797.249 kb on - strand at 797.249 kb on - strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.267 kb on - strand at 797.267 kb on - strand at 797.288 kb on + strand at 797.298 kb on + strand at 797.303 kb on + strand at 797.303 kb on + strand at 797.320 kb on + strand at 797.345 kb on + strand at 797.382 kb on + strand at 797.383 kb on - strand at 797.392 kb on + strand at 797.392 kb on + strand at 797.395 kb on + strand at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.490 kb on - strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.946 kb on + strand, within Sama_0642 at 797.957 kb on + strand, within Sama_0642 at 797.988 kb on - strand, within Sama_0642 at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.098 kb on + strand at 798.099 kb on - strand at 798.099 kb on - strand at 798.113 kb on + strand at 798.114 kb on - strand at 798.203 kb on + strand at 798.206 kb on + strand at 798.234 kb on + strand at 798.234 kb on + strand at 798.262 kb on + strand at 798.262 kb on + strand at 798.262 kb on + strand at 798.327 kb on + strand at 798.328 kb on - strand at 798.328 kb on - strand at 798.381 kb on + strand at 798.424 kb on + strand, within Sama_0643 at 798.424 kb on + strand, within Sama_0643 at 798.425 kb on - strand, within Sama_0643 at 798.557 kb on + strand, within Sama_0643 at 798.557 kb on + strand, within Sama_0643 at 798.558 kb on - strand, within Sama_0643 at 798.646 kb on - strand, within Sama_0643 at 798.663 kb on + strand, within Sama_0643 at 798.663 kb on + strand, within Sama_0643 at 798.682 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.835 kb on + strand, within Sama_0643 at 798.871 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.997 kb on + strand, within Sama_0643 at 798.997 kb on + strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 796,336 + Sama_0641 0.13 -1.7 796,336 + Sama_0641 0.13 -0.4 796,336 + Sama_0641 0.13 -0.9 796,336 + Sama_0641 0.13 -0.8 796,336 + Sama_0641 0.13 +2.6 796,336 + Sama_0641 0.13 -1.9 796,337 - Sama_0641 0.13 -0.4 796,337 - Sama_0641 0.13 +1.9 796,337 - Sama_0641 0.13 +0.3 796,337 - Sama_0641 0.13 +0.6 796,337 - Sama_0641 0.13 +0.3 796,337 - Sama_0641 0.13 +0.8 796,337 - Sama_0641 0.13 +1.6 796,337 - Sama_0641 0.13 -0.8 796,337 - Sama_0641 0.13 +0.4 796,468 + Sama_0641 0.26 -0.7 796,474 + Sama_0641 0.27 +0.5 796,475 - Sama_0641 0.27 +0.2 796,475 - Sama_0641 0.27 -2.3 796,646 + Sama_0641 0.45 -0.8 796,646 + Sama_0641 0.45 -0.1 796,647 - Sama_0641 0.45 -0.4 796,731 + Sama_0641 0.53 -0.5 796,731 + Sama_0641 0.53 +1.0 796,732 - Sama_0641 0.53 +1.4 796,732 - Sama_0641 0.53 +1.2 796,783 + Sama_0641 0.59 -0.4 796,783 + Sama_0641 0.59 -2.7 796,784 - Sama_0641 0.59 -0.7 796,784 - Sama_0641 0.59 +2.4 796,867 + Sama_0641 0.67 -0.0 796,868 - Sama_0641 0.67 -0.7 796,868 - Sama_0641 0.67 +0.7 796,868 - Sama_0641 0.67 +0.0 796,897 + Sama_0641 0.70 -1.4 796,898 - Sama_0641 0.70 -0.3 796,898 - Sama_0641 0.70 -1.0 797,072 + Sama_0641 0.88 -0.5 797,073 - Sama_0641 0.88 -0.0 797,073 - Sama_0641 0.88 +0.3 797,073 - Sama_0641 0.88 -0.1 797,073 - Sama_0641 0.88 -2.0 797,163 + +0.7 797,163 + -1.3 797,163 + -0.0 797,163 + +1.0 797,163 + -1.8 797,163 + -0.9 797,163 + +0.3 797,163 + -0.7 797,163 + -0.6 797,163 + -0.5 797,163 + -0.0 797,163 + -0.5 797,163 + +0.2 797,163 + +1.0 797,163 + -0.7 797,164 - -0.8 797,164 - +0.0 797,164 - -0.6 797,164 - -2.6 797,164 - +1.3 797,164 - -2.1 797,164 - +0.9 797,164 - -1.1 797,164 - -0.3 797,164 - +0.9 797,167 + -2.3 797,167 + +0.5 797,167 + +0.5 797,167 + -2.2 797,167 + -1.7 797,167 + +1.5 797,167 + -2.7 797,167 + -1.6 797,167 + -2.7 797,168 - -0.3 797,168 - -0.0 797,168 - +1.4 797,168 - -0.0 797,168 - -2.0 797,168 - -1.7 797,168 - +0.6 797,168 - +0.5 797,168 - +0.7 797,168 - +0.3 797,169 - -0.2 797,179 - +1.0 797,210 + +1.7 797,210 + +2.3 797,248 + +2.0 797,248 + -1.0 797,249 - +2.0 797,249 - +1.8 797,254 + +1.9 797,254 + +0.5 797,254 + -0.2 797,257 + +0.3 797,257 + -1.3 797,257 + -0.8 797,257 + -0.4 797,257 + -2.0 797,257 + +0.1 797,258 - -1.0 797,258 - -0.4 797,258 - -0.4 797,261 + +0.1 797,261 + -0.4 797,261 + -1.1 797,261 + -2.1 797,261 + +0.1 797,261 + -1.5 797,261 + +0.7 797,262 - +1.0 797,262 - +2.5 797,262 - +1.0 797,264 + -0.1 797,264 + +1.0 797,264 + -0.4 797,264 + -0.6 797,264 + -1.4 797,266 + +0.6 797,266 + -0.8 797,266 + -0.4 797,266 + -1.0 797,267 - +1.5 797,267 - +0.8 797,288 + -1.1 797,298 + +0.5 797,303 + -0.4 797,303 + +0.1 797,320 + +0.5 797,345 + -1.0 797,382 + +1.5 797,383 - +1.6 797,392 + -0.5 797,392 + -0.6 797,395 + -0.5 797,462 + Sama_0642 0.17 +0.3 797,462 + Sama_0642 0.17 +0.6 797,462 + Sama_0642 0.17 +0.7 797,489 + Sama_0642 0.20 +0.6 797,489 + Sama_0642 0.20 +2.4 797,490 - Sama_0642 0.21 +1.5 797,769 + Sama_0642 0.57 +1.9 797,769 + Sama_0642 0.57 -2.0 797,946 + Sama_0642 0.80 -0.8 797,957 + Sama_0642 0.82 +0.6 797,988 - Sama_0642 0.86 +0.0 798,095 + +0.3 798,095 + -0.8 798,095 + +0.2 798,095 + -1.1 798,095 + +1.1 798,096 - -0.7 798,096 - +2.0 798,096 - -1.0 798,096 - -0.2 798,098 + +1.9 798,099 - +1.0 798,099 - -1.4 798,113 + -0.1 798,114 - -1.1 798,203 + -0.1 798,206 + -1.2 798,234 + -1.6 798,234 + +0.6 798,262 + +0.8 798,262 + -0.4 798,262 + -0.5 798,327 + +3.4 798,328 - +1.9 798,328 - +1.0 798,381 + -1.4 798,424 + Sama_0643 0.13 +0.7 798,424 + Sama_0643 0.13 +1.6 798,425 - Sama_0643 0.13 +0.8 798,557 + Sama_0643 0.22 -0.6 798,557 + Sama_0643 0.22 +0.6 798,558 - Sama_0643 0.22 +1.0 798,646 - Sama_0643 0.28 -0.4 798,663 + Sama_0643 0.30 +0.9 798,663 + Sama_0643 0.30 +2.0 798,682 + Sama_0643 0.31 -0.1 798,707 + Sama_0643 0.33 +2.2 798,707 + Sama_0643 0.33 -0.8 798,707 + Sama_0643 0.33 +1.0 798,707 + Sama_0643 0.33 +3.1 798,707 + Sama_0643 0.33 -1.3 798,708 - Sama_0643 0.33 +0.3 798,708 - Sama_0643 0.33 -0.4 798,708 - Sama_0643 0.33 +2.1 798,708 - Sama_0643 0.33 -0.9 798,835 + Sama_0643 0.41 +2.6 798,871 + Sama_0643 0.44 +1.0 798,919 + Sama_0643 0.47 +2.4 798,919 + Sama_0643 0.47 -1.7 798,919 + Sama_0643 0.47 -1.9 798,919 + Sama_0643 0.47 -2.3 798,929 + Sama_0643 0.48 +1.6 798,929 + Sama_0643 0.48 +0.8 798,929 + Sama_0643 0.48 -0.8 798,929 + Sama_0643 0.48 -0.4 798,929 + Sama_0643 0.48 -0.0 798,929 + Sama_0643 0.48 -1.4 798,929 + Sama_0643 0.48 -0.0 798,929 + Sama_0643 0.48 -0.6 798,930 - Sama_0643 0.48 +0.9 798,930 - Sama_0643 0.48 +0.6 798,930 - Sama_0643 0.48 +0.6 798,930 - Sama_0643 0.48 -0.8 798,930 - Sama_0643 0.48 +0.7 798,997 + Sama_0643 0.53 -0.0 798,997 + Sama_0643 0.53 -1.1 798,998 - Sama_0643 0.53 -1.9 798,998 - Sama_0643 0.53 -0.4 798,998 - Sama_0643 0.53 -1.1
Or see this region's nucleotide sequence