Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0638 and Sama_0639 overlap by 4 nucleotides Sama_0639 and Sama_0640 are separated by 27 nucleotides Sama_0640 and Sama_0641 are separated by 2 nucleotides Sama_0641 and Sama_0642 are separated by 145 nucleotides
Sama_0638: Sama_0638 - TPR domain-containing protein (RefSeq), at 794,055 to 795,434
_0638
Sama_0639: Sama_0639 - peptide deformylase (RefSeq), at 795,431 to 795,955
_0639
Sama_0640: Sama_0640 - SlyX protein (RefSeq), at 795,983 to 796,207
_0640
Sama_0641: Sama_0641 - hypothetical protein (RefSeq), at 796,210 to 797,187
_0641
Sama_0642: Sama_0642 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq), at 797,333 to 798,097
_0642
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.210 kb on - strand, within Sama_0638 at 795.210 kb on - strand, within Sama_0638 at 795.253 kb on + strand, within Sama_0638 at 795.336 kb on + strand at 795.336 kb on + strand at 795.336 kb on + strand at 795.337 kb on - strand at 795.337 kb on - strand at 795.359 kb on - strand at 795.365 kb on + strand at 795.414 kb on + strand at 795.415 kb on - strand at 795.415 kb on - strand at 795.567 kb on + strand, within Sama_0639 at 795.567 kb on + strand, within Sama_0639 at 795.567 kb on + strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.581 kb on + strand, within Sama_0639 at 795.582 kb on - strand, within Sama_0639 at 795.582 kb on - strand, within Sama_0639 at 795.622 kb on + strand, within Sama_0639 at 795.622 kb on + strand, within Sama_0639 at 795.623 kb on - strand, within Sama_0639 at 795.742 kb on - strand, within Sama_0639 at 795.742 kb on - strand, within Sama_0639 at 795.806 kb on + strand, within Sama_0639 at 795.806 kb on + strand, within Sama_0639 at 795.809 kb on - strand, within Sama_0639 at 795.809 kb on - strand, within Sama_0639 at 795.878 kb on + strand, within Sama_0639 at 795.878 kb on + strand, within Sama_0639 at 795.879 kb on - strand, within Sama_0639 at 795.879 kb on - strand, within Sama_0639 at 795.879 kb on - strand, within Sama_0639 at 795.981 kb on + strand at 795.982 kb on - strand at 795.982 kb on - strand at 795.982 kb on - strand at 795.984 kb on + strand at 795.984 kb on + strand at 795.984 kb on + strand at 795.984 kb on + strand at 795.984 kb on + strand at 795.985 kb on - strand at 795.985 kb on - strand at 795.985 kb on - strand at 795.985 kb on - strand at 795.987 kb on + strand at 795.988 kb on - strand at 796.047 kb on - strand, within Sama_0640 at 796.047 kb on - strand, within Sama_0640 at 796.047 kb on - strand, within Sama_0640 at 796.052 kb on - strand, within Sama_0640 at 796.052 kb on - strand, within Sama_0640 at 796.105 kb on + strand, within Sama_0640 at 796.106 kb on - strand, within Sama_0640 at 796.106 kb on - strand, within Sama_0640 at 796.106 kb on - strand, within Sama_0640 at 796.120 kb on + strand, within Sama_0640 at 796.121 kb on - strand, within Sama_0640 at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.195 kb on + strand at 796.195 kb on + strand at 796.195 kb on + strand at 796.195 kb on + strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.212 kb on - strand at 796.212 kb on - strand at 796.212 kb on - strand at 796.212 kb on - strand at 796.226 kb on + strand at 796.226 kb on + strand at 796.227 kb on - strand at 796.227 kb on - strand at 796.227 kb on - strand at 796.252 kb on - strand at 796.297 kb on + strand at 796.297 kb on + strand at 796.297 kb on + strand at 796.297 kb on + strand at 796.297 kb on + strand at 796.298 kb on - strand at 796.298 kb on - strand at 796.298 kb on - strand at 796.298 kb on - strand at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.468 kb on + strand, within Sama_0641 at 796.474 kb on + strand, within Sama_0641 at 796.475 kb on - strand, within Sama_0641 at 796.475 kb on - strand, within Sama_0641 at 796.646 kb on + strand, within Sama_0641 at 796.646 kb on + strand, within Sama_0641 at 796.647 kb on - strand, within Sama_0641 at 796.731 kb on + strand, within Sama_0641 at 796.731 kb on + strand, within Sama_0641 at 796.732 kb on - strand, within Sama_0641 at 796.732 kb on - strand, within Sama_0641 at 796.783 kb on + strand, within Sama_0641 at 796.783 kb on + strand, within Sama_0641 at 796.784 kb on - strand, within Sama_0641 at 796.784 kb on - strand, within Sama_0641 at 796.867 kb on + strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.897 kb on + strand, within Sama_0641 at 796.898 kb on - strand, within Sama_0641 at 796.898 kb on - strand, within Sama_0641 at 797.072 kb on + strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.169 kb on - strand at 797.179 kb on - strand at 797.210 kb on + strand at 797.210 kb on + strand at 797.248 kb on + strand at 797.248 kb on + strand at 797.249 kb on - strand at 797.249 kb on - strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.267 kb on - strand at 797.267 kb on - strand at 797.288 kb on + strand at 797.298 kb on + strand at 797.303 kb on + strand at 797.303 kb on + strand at 797.320 kb on + strand at 797.345 kb on + strand at 797.382 kb on + strand at 797.383 kb on - strand at 797.392 kb on + strand at 797.392 kb on + strand at 797.395 kb on + strand at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.490 kb on - strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.946 kb on + strand, within Sama_0642 at 797.957 kb on + strand, within Sama_0642 at 797.988 kb on - strand, within Sama_0642 at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.098 kb on + strand at 798.099 kb on - strand at 798.099 kb on - strand at 798.113 kb on + strand at 798.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 795,210 - Sama_0638 0.84 -1.7 795,210 - Sama_0638 0.84 +0.1 795,253 + Sama_0638 0.87 +1.4 795,336 + +1.3 795,336 + +0.1 795,336 + +2.0 795,337 - -3.2 795,337 - +0.1 795,359 - -0.2 795,365 + -1.2 795,414 + +1.9 795,415 - +0.1 795,415 - -0.3 795,567 + Sama_0639 0.26 -0.4 795,567 + Sama_0639 0.26 +3.1 795,567 + Sama_0639 0.26 -0.7 795,568 - Sama_0639 0.26 -0.6 795,568 - Sama_0639 0.26 +0.2 795,568 - Sama_0639 0.26 +2.4 795,568 - Sama_0639 0.26 -2.0 795,568 - Sama_0639 0.26 +1.1 795,581 + Sama_0639 0.29 +2.8 795,582 - Sama_0639 0.29 -1.4 795,582 - Sama_0639 0.29 +0.3 795,622 + Sama_0639 0.36 +1.2 795,622 + Sama_0639 0.36 -2.1 795,623 - Sama_0639 0.37 +1.2 795,742 - Sama_0639 0.59 +0.4 795,742 - Sama_0639 0.59 -0.0 795,806 + Sama_0639 0.71 +0.4 795,806 + Sama_0639 0.71 +0.3 795,809 - Sama_0639 0.72 +0.0 795,809 - Sama_0639 0.72 -0.7 795,878 + Sama_0639 0.85 -0.5 795,878 + Sama_0639 0.85 +2.1 795,879 - Sama_0639 0.85 -2.7 795,879 - Sama_0639 0.85 -1.3 795,879 - Sama_0639 0.85 -0.7 795,981 + -2.3 795,982 - -0.4 795,982 - +0.6 795,982 - +1.4 795,984 + -1.0 795,984 + -2.5 795,984 + -1.2 795,984 + +0.9 795,984 + +2.0 795,985 - +1.1 795,985 - +1.4 795,985 - -0.8 795,985 - -1.2 795,987 + +0.8 795,988 - -1.7 796,047 - Sama_0640 0.28 -0.0 796,047 - Sama_0640 0.28 -2.5 796,047 - Sama_0640 0.28 -0.1 796,052 - Sama_0640 0.31 -0.7 796,052 - Sama_0640 0.31 -1.6 796,105 + Sama_0640 0.54 -1.6 796,106 - Sama_0640 0.55 -1.0 796,106 - Sama_0640 0.55 -1.6 796,106 - Sama_0640 0.55 -0.5 796,120 + Sama_0640 0.61 -0.2 796,121 - Sama_0640 0.61 -0.8 796,193 + -2.3 796,193 + -1.2 796,193 + -0.9 796,193 + -1.4 796,193 + +0.3 796,193 + +1.6 796,193 + +0.3 796,193 + -1.2 796,193 + -2.0 796,193 + -2.4 796,193 + -0.7 796,193 + -1.0 796,193 + -2.1 796,193 + -1.6 796,194 - +1.6 796,194 - -1.0 796,194 - -2.1 796,194 - -1.1 796,194 - -1.0 796,194 - -1.0 796,194 - +0.5 796,194 - -0.2 796,194 - -2.3 796,194 - -0.6 796,194 - -0.4 796,195 + -0.8 796,195 + +0.6 796,195 + -1.9 796,195 + -2.6 796,196 - -1.3 796,196 - -2.7 796,196 - -1.5 796,196 - -1.5 796,196 - -1.6 796,196 - -1.6 796,196 - -3.0 796,212 - +1.7 796,212 - -1.0 796,212 - +1.9 796,212 - -0.2 796,226 + -1.1 796,226 + +0.1 796,227 - +0.2 796,227 - -0.0 796,227 - -0.6 796,252 - -1.2 796,297 + +1.6 796,297 + -2.7 796,297 + -0.4 796,297 + -1.4 796,297 + +0.8 796,298 - +0.8 796,298 - +0.6 796,298 - -1.9 796,298 - +2.4 796,336 + Sama_0641 0.13 -1.7 796,336 + Sama_0641 0.13 -0.4 796,336 + Sama_0641 0.13 -0.9 796,336 + Sama_0641 0.13 -0.8 796,336 + Sama_0641 0.13 +2.6 796,336 + Sama_0641 0.13 -1.9 796,337 - Sama_0641 0.13 -0.4 796,337 - Sama_0641 0.13 +1.9 796,337 - Sama_0641 0.13 +0.3 796,337 - Sama_0641 0.13 +0.6 796,337 - Sama_0641 0.13 +0.3 796,337 - Sama_0641 0.13 +0.8 796,337 - Sama_0641 0.13 +1.6 796,337 - Sama_0641 0.13 -0.8 796,337 - Sama_0641 0.13 +0.4 796,468 + Sama_0641 0.26 -0.7 796,474 + Sama_0641 0.27 +0.5 796,475 - Sama_0641 0.27 +0.2 796,475 - Sama_0641 0.27 -2.3 796,646 + Sama_0641 0.45 -0.8 796,646 + Sama_0641 0.45 -0.1 796,647 - Sama_0641 0.45 -0.4 796,731 + Sama_0641 0.53 -0.5 796,731 + Sama_0641 0.53 +1.0 796,732 - Sama_0641 0.53 +1.4 796,732 - Sama_0641 0.53 +1.2 796,783 + Sama_0641 0.59 -0.4 796,783 + Sama_0641 0.59 -2.7 796,784 - Sama_0641 0.59 -0.7 796,784 - Sama_0641 0.59 +2.4 796,867 + Sama_0641 0.67 -0.0 796,868 - Sama_0641 0.67 -0.7 796,868 - Sama_0641 0.67 +0.7 796,868 - Sama_0641 0.67 +0.0 796,897 + Sama_0641 0.70 -1.4 796,898 - Sama_0641 0.70 -0.3 796,898 - Sama_0641 0.70 -1.0 797,072 + Sama_0641 0.88 -0.5 797,073 - Sama_0641 0.88 -0.0 797,073 - Sama_0641 0.88 +0.3 797,073 - Sama_0641 0.88 -0.1 797,073 - Sama_0641 0.88 -2.0 797,163 + +0.7 797,163 + -1.3 797,163 + -0.0 797,163 + +1.0 797,163 + -1.8 797,163 + -0.9 797,163 + +0.3 797,163 + -0.7 797,163 + -0.6 797,163 + -0.5 797,163 + -0.0 797,163 + -0.5 797,163 + +0.2 797,163 + +1.0 797,163 + -0.7 797,164 - -0.8 797,164 - +0.0 797,164 - -0.6 797,164 - -2.6 797,164 - +1.3 797,164 - -2.1 797,164 - +0.9 797,164 - -1.1 797,164 - -0.3 797,164 - +0.9 797,167 + -2.3 797,167 + +0.5 797,167 + +0.5 797,167 + -2.2 797,167 + -1.7 797,167 + +1.5 797,167 + -2.7 797,167 + -1.6 797,167 + -2.7 797,168 - -0.3 797,168 - -0.0 797,168 - +1.4 797,168 - -0.0 797,168 - -2.0 797,168 - -1.7 797,168 - +0.6 797,168 - +0.5 797,168 - +0.7 797,168 - +0.3 797,169 - -0.2 797,179 - +1.0 797,210 + +1.7 797,210 + +2.3 797,248 + +2.0 797,248 + -1.0 797,249 - +2.0 797,249 - +1.8 797,254 + +1.9 797,254 + +0.5 797,254 + -0.2 797,257 + +0.3 797,257 + -1.3 797,257 + -0.8 797,257 + -0.4 797,257 + -2.0 797,257 + +0.1 797,258 - -1.0 797,258 - -0.4 797,258 - -0.4 797,261 + +0.1 797,261 + -0.4 797,261 + -1.1 797,261 + -2.1 797,261 + +0.1 797,261 + -1.5 797,261 + +0.7 797,262 - +1.0 797,262 - +2.5 797,262 - +1.0 797,264 + -0.1 797,264 + +1.0 797,264 + -0.4 797,264 + -0.6 797,264 + -1.4 797,266 + +0.6 797,266 + -0.8 797,266 + -0.4 797,266 + -1.0 797,267 - +1.5 797,267 - +0.8 797,288 + -1.1 797,298 + +0.5 797,303 + -0.4 797,303 + +0.1 797,320 + +0.5 797,345 + -1.0 797,382 + +1.5 797,383 - +1.6 797,392 + -0.5 797,392 + -0.6 797,395 + -0.5 797,462 + Sama_0642 0.17 +0.3 797,462 + Sama_0642 0.17 +0.6 797,462 + Sama_0642 0.17 +0.7 797,489 + Sama_0642 0.20 +0.6 797,489 + Sama_0642 0.20 +2.4 797,490 - Sama_0642 0.21 +1.5 797,769 + Sama_0642 0.57 +1.9 797,769 + Sama_0642 0.57 -2.0 797,946 + Sama_0642 0.80 -0.8 797,957 + Sama_0642 0.82 +0.6 797,988 - Sama_0642 0.86 +0.0 798,095 + +0.3 798,095 + -0.8 798,095 + +0.2 798,095 + -1.1 798,095 + +1.1 798,096 - -0.7 798,096 - +2.0 798,096 - -1.0 798,096 - -0.2 798,098 + +1.9 798,099 - +1.0 798,099 - -1.4 798,113 + -0.1 798,114 - -1.1
Or see this region's nucleotide sequence