Strain Fitness in Shewanella amazonensis SB2B around Sama_0587

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0586 and Sama_0587 are separated by 324 nucleotidesSama_0587 and Sama_0588 are separated by 3 nucleotidesSama_0588 and Sama_0589 are separated by 54 nucleotides Sama_0586: Sama_0586 - LysR family transcriptional regulator (RefSeq), at 732,315 to 733,223 _0586 Sama_0587: Sama_0587 - PepSY-associated TM helix (RefSeq), at 733,548 to 734,306 _0587 Sama_0588: Sama_0588 - FMN-binding (RefSeq), at 734,310 to 734,819 _0588 Sama_0589: Sama_0589 - phosphate-selective porin O and P (RefSeq), at 734,874 to 736,049 _0589 Position (kb) 733 734 735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 732.562 kb on + strand, within Sama_0586at 732.579 kb on + strand, within Sama_0586at 732.637 kb on + strand, within Sama_0586at 732.637 kb on + strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.644 kb on + strand, within Sama_0586at 732.644 kb on + strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.730 kb on + strand, within Sama_0586at 732.871 kb on + strand, within Sama_0586at 732.872 kb on - strand, within Sama_0586at 732.943 kb on + strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.973 kb on - strand, within Sama_0586at 732.973 kb on - strand, within Sama_0586at 732.987 kb on + strand, within Sama_0586at 733.250 kb on + strandat 733.261 kb on + strandat 733.266 kb on - strandat 733.266 kb on - strandat 733.282 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.336 kb on - strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.351 kb on - strandat 733.493 kb on + strandat 733.507 kb on + strandat 733.516 kb on + strandat 733.516 kb on + strandat 733.549 kb on + strandat 733.550 kb on - strandat 733.573 kb on - strandat 733.583 kb on - strandat 733.583 kb on - strandat 733.605 kb on + strandat 733.606 kb on - strandat 733.725 kb on + strand, within Sama_0587at 733.726 kb on - strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.817 kb on - strand, within Sama_0587at 733.914 kb on + strand, within Sama_0587at 733.915 kb on - strand, within Sama_0587at 733.942 kb on + strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.025 kb on - strand, within Sama_0587at 734.062 kb on + strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.116 kb on - strand, within Sama_0587at 734.170 kb on - strand, within Sama_0587at 734.176 kb on - strand, within Sama_0587at 734.217 kb on - strand, within Sama_0587at 734.276 kb on + strandat 734.277 kb on - strandat 734.286 kb on - strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.342 kb on - strandat 734.342 kb on - strandat 734.376 kb on + strand, within Sama_0588at 734.409 kb on - strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.504 kb on - strand, within Sama_0588at 734.505 kb on + strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.511 kb on + strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.526 kb on + strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.561 kb on + strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.620 kb on + strand, within Sama_0588at 734.626 kb on - strand, within Sama_0588at 734.641 kb on + strand, within Sama_0588at 734.642 kb on - strand, within Sama_0588at 734.682 kb on - strand, within Sama_0588at 734.748 kb on - strand, within Sama_0588at 734.809 kb on + strandat 734.809 kb on + strandat 734.810 kb on - strandat 734.810 kb on - strandat 734.839 kb on + strandat 734.839 kb on + strandat 734.840 kb on - strandat 734.851 kb on + strandat 734.851 kb on + strandat 734.862 kb on + strandat 734.863 kb on - strandat 734.863 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.885 kb on - strandat 734.953 kb on - strandat 734.953 kb on - strandat 734.974 kb on + strandat 734.975 kb on - strandat 734.981 kb on + strandat 734.981 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 735.098 kb on - strand, within Sama_0589at 735.098 kb on - strand, within Sama_0589at 735.163 kb on + strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.197 kb on - strand, within Sama_0589at 735.201 kb on - strand, within Sama_0589at 735.237 kb on + strand, within Sama_0589at 735.238 kb on - strand, within Sama_0589at 735.248 kb on + strand, within Sama_0589

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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732,562 + Sama_0586 0.27 -2.0
732,579 + Sama_0586 0.29 -1.5
732,637 + Sama_0586 0.35 -1.0
732,637 + Sama_0586 0.35 -0.0
732,638 - Sama_0586 0.36 -1.7
732,638 - Sama_0586 0.36 -1.9
732,638 - Sama_0586 0.36 -2.0
732,638 - Sama_0586 0.36 -2.3
732,638 - Sama_0586 0.36 -0.8
732,638 - Sama_0586 0.36 -1.6
732,644 + Sama_0586 0.36 -0.4
732,644 + Sama_0586 0.36 -1.4
732,645 - Sama_0586 0.36 -1.6
732,645 - Sama_0586 0.36 -2.8
732,645 - Sama_0586 0.36 -1.0
732,645 - Sama_0586 0.36 -2.6
732,730 + Sama_0586 0.46 -1.2
732,871 + Sama_0586 0.61 +0.6
732,872 - Sama_0586 0.61 +0.6
732,943 + Sama_0586 0.69 -0.9
732,944 - Sama_0586 0.69 -1.2
732,944 - Sama_0586 0.69 -3.8
732,944 - Sama_0586 0.69 +3.8
732,944 - Sama_0586 0.69 -2.8
732,973 - Sama_0586 0.72 -2.0
732,973 - Sama_0586 0.72 -3.1
732,987 + Sama_0586 0.74 -1.2
733,250 + -1.6
733,261 + -3.0
733,266 - -2.1
733,266 - -0.5
733,282 + -4.0
733,335 + +0.6
733,335 + -1.7
733,335 + -0.4
733,335 + -1.0
733,335 + -1.0
733,335 + -2.0
733,336 - -2.0
733,350 + -0.8
733,350 + -0.0
733,350 + -0.8
733,350 + +0.2
733,350 + -0.4
733,351 - +1.0
733,493 + -0.0
733,507 + +1.1
733,516 + -1.0
733,516 + -1.2
733,549 + -1.0
733,550 - +0.3
733,573 - +0.3
733,583 - -0.8
733,583 - -1.6
733,605 + -1.8
733,606 - +0.6
733,725 + Sama_0587 0.23 +0.6
733,726 - Sama_0587 0.23 +1.7
733,816 + Sama_0587 0.35 -0.0
733,816 + Sama_0587 0.35 +0.2
733,817 - Sama_0587 0.35 -0.8
733,914 + Sama_0587 0.48 +0.6
733,915 - Sama_0587 0.48 -0.0
733,942 + Sama_0587 0.52 -0.4
733,943 - Sama_0587 0.52 +1.2
733,943 - Sama_0587 0.52 +0.6
733,943 - Sama_0587 0.52 +0.9
733,943 - Sama_0587 0.52 +1.6
734,024 + Sama_0587 0.63 +2.9
734,024 + Sama_0587 0.63 -1.9
734,024 + Sama_0587 0.63 -0.3
734,025 - Sama_0587 0.63 +0.8
734,062 + Sama_0587 0.68 +2.2
734,063 - Sama_0587 0.68 -0.9
734,063 - Sama_0587 0.68 -0.3
734,063 - Sama_0587 0.68 -1.8
734,104 + Sama_0587 0.73 -0.0
734,104 + Sama_0587 0.73 +3.7
734,105 - Sama_0587 0.73 +0.3
734,105 - Sama_0587 0.73 +2.0
734,107 + Sama_0587 0.74 +0.7
734,107 + Sama_0587 0.74 +0.1
734,116 - Sama_0587 0.75 +1.6
734,170 - Sama_0587 0.82 -0.4
734,176 - Sama_0587 0.83 -0.8
734,217 - Sama_0587 0.88 +2.4
734,276 + -0.2
734,277 - +0.8
734,286 - -0.2
734,341 + +1.9
734,341 + +1.0
734,341 + +2.2
734,341 + +2.4
734,342 - -1.6
734,342 - -1.1
734,376 + Sama_0588 0.13 -0.8
734,409 - Sama_0588 0.19 +1.2
734,503 + Sama_0588 0.38 -0.6
734,503 + Sama_0588 0.38 +1.2
734,504 - Sama_0588 0.38 +0.8
734,505 + Sama_0588 0.38 +2.0
734,506 - Sama_0588 0.38 -1.2
734,506 - Sama_0588 0.38 +0.2
734,511 + Sama_0588 0.39 +0.4
734,512 - Sama_0588 0.40 +0.3
734,512 - Sama_0588 0.40 +0.8
734,526 + Sama_0588 0.42 -0.6
734,527 - Sama_0588 0.43 +0.1
734,527 - Sama_0588 0.43 -0.0
734,561 + Sama_0588 0.49 -0.8
734,562 - Sama_0588 0.49 +0.6
734,562 - Sama_0588 0.49 -2.3
734,620 + Sama_0588 0.61 -2.2
734,626 - Sama_0588 0.62 +0.5
734,641 + Sama_0588 0.65 -2.6
734,642 - Sama_0588 0.65 +0.1
734,682 - Sama_0588 0.73 +0.9
734,748 - Sama_0588 0.86 -2.2
734,809 + +1.2
734,809 + +0.8
734,810 - +0.6
734,810 - -2.0
734,839 + +4.2
734,839 + -0.0
734,840 - +0.5
734,851 + -2.0
734,851 + -1.0
734,862 + -0.9
734,863 - -1.7
734,863 - +0.4
734,867 - +1.2
734,867 - -0.2
734,867 - +1.9
734,885 - +0.3
734,953 - +0.8
734,953 - +2.2
734,974 + -0.0
734,975 - +3.9
734,981 + +0.8
734,981 - +0.6
734,982 - -0.5
734,982 - +0.7
734,982 - +2.1
734,982 - +0.2
734,985 + +2.6
734,985 + -0.0
734,985 + +3.0
734,985 + -1.0
734,985 + +1.8
734,986 - +1.5
734,986 - +1.7
734,986 - +1.1
734,986 - -0.0
734,986 - +1.2
735,098 - Sama_0589 0.19 -1.4
735,098 - Sama_0589 0.19 -1.0
735,163 + Sama_0589 0.25 +2.6
735,164 - Sama_0589 0.25 +0.3
735,164 - Sama_0589 0.25 +0.3
735,180 - Sama_0589 0.26 +3.2
735,180 - Sama_0589 0.26 -0.1
735,180 - Sama_0589 0.26 +0.6
735,180 - Sama_0589 0.26 +1.7
735,197 - Sama_0589 0.27 +1.6
735,201 - Sama_0589 0.28 +0.9
735,237 + Sama_0589 0.31 +2.6
735,238 - Sama_0589 0.31 +1.6
735,248 + Sama_0589 0.32 -0.6

Or see this region's nucleotide sequence