Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0533 and Sama_0534 are separated by 246 nucleotides Sama_0534 and Sama_0535 are separated by 161 nucleotides Sama_0535 and Sama_0536 are separated by 95 nucleotides
Sama_0533: Sama_0533 - alcohol dehydrogenase, zinc-containing (RefSeq), at 657,261 to 658,262
_0533
Sama_0534: Sama_0534 - hypothetical protein (RefSeq), at 658,509 to 658,931
_0534
Sama_0535: Sama_0535 - Aldose 1-epimerase (EC 5.1.3.3) <small>(from data)</small>, at 659,093 to 660,118
_0535
Sama_0536: Sama_0536 - galactokinase (RefSeq), at 660,214 to 661,362
_0536
Position (kb) 659
660
661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.151 kb on + strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.152 kb on - strand, within Sama_0533 at 658.153 kb on + strand, within Sama_0533 at 658.153 kb on + strand, within Sama_0533 at 658.153 kb on + strand, within Sama_0533 at 658.153 kb on + strand, within Sama_0533 at 658.153 kb on + strand, within Sama_0533 at 658.153 kb on + strand, within Sama_0533 at 658.154 kb on - strand, within Sama_0533 at 658.154 kb on - strand, within Sama_0533 at 658.154 kb on - strand, within Sama_0533 at 658.154 kb on - strand, within Sama_0533 at 658.154 kb on - strand, within Sama_0533 at 658.191 kb on - strand at 658.191 kb on - strand at 658.253 kb on - strand at 658.293 kb on + strand at 658.325 kb on + strand at 658.326 kb on - strand at 658.353 kb on - strand at 658.383 kb on + strand at 658.384 kb on - strand at 658.384 kb on - strand at 658.389 kb on + strand at 658.412 kb on + strand at 658.467 kb on + strand at 658.475 kb on + strand at 658.480 kb on + strand at 658.480 kb on + strand at 658.480 kb on + strand at 658.480 kb on + strand at 658.480 kb on + strand at 658.480 kb on + strand at 658.480 kb on + strand at 658.480 kb on + strand at 658.480 kb on + strand at 658.481 kb on - strand at 658.481 kb on - strand at 658.481 kb on - strand at 658.481 kb on - strand at 658.481 kb on - strand at 658.481 kb on - strand at 658.481 kb on - strand at 658.491 kb on + strand at 658.491 kb on + strand at 658.491 kb on + strand at 658.491 kb on + strand at 658.491 kb on + strand at 658.492 kb on - strand at 658.492 kb on - strand at 658.492 kb on - strand at 658.492 kb on - strand at 658.493 kb on + strand at 658.493 kb on + strand at 658.493 kb on + strand at 658.493 kb on + strand at 658.494 kb on - strand at 658.494 kb on - strand at 658.494 kb on - strand at 658.494 kb on - strand at 658.494 kb on - strand at 658.498 kb on + strand at 658.499 kb on - strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.506 kb on + strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.507 kb on - strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.508 kb on + strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.509 kb on - strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.512 kb on + strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.513 kb on - strand at 658.514 kb on + strand at 658.515 kb on - strand at 658.515 kb on - strand at 658.515 kb on - strand at 658.620 kb on + strand, within Sama_0534 at 658.620 kb on + strand, within Sama_0534 at 658.620 kb on + strand, within Sama_0534 at 658.620 kb on + strand, within Sama_0534 at 658.621 kb on - strand, within Sama_0534 at 658.621 kb on - strand, within Sama_0534 at 658.621 kb on - strand, within Sama_0534 at 658.626 kb on + strand, within Sama_0534 at 658.627 kb on - strand, within Sama_0534 at 658.627 kb on - strand, within Sama_0534 at 658.627 kb on - strand, within Sama_0534 at 658.628 kb on + strand, within Sama_0534 at 658.628 kb on + strand, within Sama_0534 at 658.628 kb on + strand, within Sama_0534 at 658.628 kb on + strand, within Sama_0534 at 658.649 kb on + strand, within Sama_0534 at 658.656 kb on + strand, within Sama_0534 at 658.656 kb on + strand, within Sama_0534 at 658.657 kb on - strand, within Sama_0534 at 658.657 kb on - strand, within Sama_0534 at 658.728 kb on + strand, within Sama_0534 at 658.728 kb on + strand, within Sama_0534 at 658.728 kb on + strand, within Sama_0534 at 658.728 kb on + strand, within Sama_0534 at 658.728 kb on + strand, within Sama_0534 at 658.728 kb on + strand, within Sama_0534 at 658.729 kb on - strand, within Sama_0534 at 658.729 kb on - strand, within Sama_0534 at 658.763 kb on + strand, within Sama_0534 at 658.763 kb on + strand, within Sama_0534 at 658.799 kb on + strand, within Sama_0534 at 658.799 kb on + strand, within Sama_0534 at 658.799 kb on + strand, within Sama_0534 at 658.799 kb on + strand, within Sama_0534 at 658.855 kb on - strand, within Sama_0534 at 658.855 kb on - strand, within Sama_0534 at 658.855 kb on - strand, within Sama_0534 at 658.855 kb on - strand, within Sama_0534 at 658.929 kb on + strand at 658.929 kb on + strand at 658.930 kb on - strand at 658.983 kb on + strand at 658.983 kb on + strand at 658.984 kb on - strand at 658.994 kb on + strand at 658.995 kb on - strand at 658.995 kb on - strand at 659.038 kb on + strand at 659.039 kb on - strand at 659.039 kb on - strand at 659.039 kb on - strand at 659.039 kb on - strand at 659.125 kb on + strand at 659.125 kb on + strand at 659.125 kb on + strand at 659.125 kb on + strand at 659.125 kb on + strand at 659.125 kb on + strand at 659.125 kb on + strand at 659.126 kb on - strand at 659.126 kb on - strand at 659.133 kb on + strand at 659.133 kb on + strand at 659.134 kb on - strand at 659.134 kb on - strand at 659.151 kb on - strand at 659.223 kb on + strand, within Sama_0535 at 659.224 kb on - strand, within Sama_0535 at 659.280 kb on + strand, within Sama_0535 at 659.281 kb on - strand, within Sama_0535 at 659.281 kb on - strand, within Sama_0535 at 659.281 kb on - strand, within Sama_0535 at 659.288 kb on + strand, within Sama_0535 at 659.289 kb on - strand, within Sama_0535 at 659.289 kb on - strand, within Sama_0535 at 659.305 kb on + strand, within Sama_0535 at 659.307 kb on + strand, within Sama_0535 at 659.308 kb on - strand, within Sama_0535 at 659.314 kb on + strand, within Sama_0535 at 659.315 kb on - strand, within Sama_0535 at 659.315 kb on - strand, within Sama_0535 at 659.315 kb on - strand, within Sama_0535 at 659.342 kb on + strand, within Sama_0535 at 659.343 kb on - strand, within Sama_0535 at 659.377 kb on + strand, within Sama_0535 at 659.378 kb on - strand, within Sama_0535 at 659.384 kb on - strand, within Sama_0535 at 659.386 kb on + strand, within Sama_0535 at 659.387 kb on - strand, within Sama_0535 at 659.432 kb on + strand, within Sama_0535 at 659.433 kb on - strand, within Sama_0535 at 659.516 kb on - strand, within Sama_0535 at 659.589 kb on + strand, within Sama_0535 at 659.589 kb on + strand, within Sama_0535 at 659.590 kb on - strand, within Sama_0535 at 659.590 kb on - strand, within Sama_0535 at 659.590 kb on - strand, within Sama_0535 at 659.590 kb on - strand, within Sama_0535 at 659.590 kb on - strand, within Sama_0535 at 659.603 kb on - strand, within Sama_0535 at 659.649 kb on + strand, within Sama_0535 at 659.649 kb on + strand, within Sama_0535 at 659.650 kb on - strand, within Sama_0535 at 659.650 kb on - strand, within Sama_0535 at 659.650 kb on - strand, within Sama_0535 at 659.650 kb on - strand, within Sama_0535 at 659.650 kb on - strand, within Sama_0535 at 659.650 kb on - strand, within Sama_0535 at 659.656 kb on + strand, within Sama_0535 at 659.657 kb on - strand, within Sama_0535 at 659.728 kb on + strand, within Sama_0535 at 659.827 kb on + strand, within Sama_0535 at 659.853 kb on + strand, within Sama_0535 at 659.853 kb on + strand, within Sama_0535 at 659.853 kb on + strand, within Sama_0535 at 659.853 kb on + strand, within Sama_0535 at 659.854 kb on - strand, within Sama_0535 at 659.886 kb on + strand, within Sama_0535 at 659.887 kb on - strand, within Sama_0535 at 659.928 kb on + strand, within Sama_0535 at 659.928 kb on + strand, within Sama_0535 at 659.929 kb on - strand, within Sama_0535 at 659.929 kb on - strand, within Sama_0535 at 659.954 kb on + strand, within Sama_0535 at 659.993 kb on + strand, within Sama_0535 at 659.994 kb on - strand, within Sama_0535 at 660.004 kb on + strand, within Sama_0535 at 660.004 kb on + strand, within Sama_0535 at 660.005 kb on - strand, within Sama_0535 at 660.005 kb on - strand, within Sama_0535 at 660.024 kb on - strand at 660.024 kb on - strand at 660.122 kb on + strand at 660.122 kb on + strand at 660.123 kb on - strand at 660.123 kb on - strand at 660.133 kb on - strand at 660.135 kb on - strand at 660.138 kb on + strand at 660.139 kb on - strand at 660.155 kb on + strand at 660.156 kb on - strand at 660.156 kb on - strand at 660.157 kb on + strand at 660.157 kb on + strand at 660.158 kb on - strand at 660.158 kb on - strand at 660.158 kb on - strand at 660.225 kb on + strand at 660.226 kb on - strand at 660.257 kb on + strand at 660.257 kb on + strand at 660.257 kb on + strand at 660.257 kb on + strand at 660.257 kb on + strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.258 kb on - strand at 660.291 kb on - strand at 660.291 kb on - strand at 660.369 kb on + strand, within Sama_0536 at 660.369 kb on + strand, within Sama_0536 at 660.438 kb on + strand, within Sama_0536 at 660.438 kb on + strand, within Sama_0536 at 660.438 kb on + strand, within Sama_0536 at 660.438 kb on + strand, within Sama_0536 at 660.438 kb on + strand, within Sama_0536 at 660.439 kb on - strand, within Sama_0536 at 660.439 kb on - strand, within Sama_0536 at 660.553 kb on + strand, within Sama_0536 at 660.554 kb on - strand, within Sama_0536 at 660.554 kb on - strand, within Sama_0536 at 660.573 kb on + strand, within Sama_0536 at 660.573 kb on + strand, within Sama_0536 at 660.574 kb on - strand, within Sama_0536 at 660.575 kb on + strand, within Sama_0536 at 660.575 kb on + strand, within Sama_0536 at 660.575 kb on + strand, within Sama_0536 at 660.575 kb on + strand, within Sama_0536 at 660.576 kb on - strand, within Sama_0536 at 660.576 kb on - strand, within Sama_0536 at 660.690 kb on + strand, within Sama_0536 at 660.690 kb on + strand, within Sama_0536 at 660.692 kb on + strand, within Sama_0536 at 660.692 kb on + strand, within Sama_0536 at 660.692 kb on + strand, within Sama_0536 at 660.692 kb on + strand, within Sama_0536 at 660.692 kb on + strand, within Sama_0536 at 660.692 kb on + strand, within Sama_0536 at 660.692 kb on + strand, within Sama_0536 at 660.693 kb on - strand, within Sama_0536 at 660.693 kb on - strand, within Sama_0536 at 660.706 kb on + strand, within Sama_0536 at 660.707 kb on - strand, within Sama_0536 at 660.707 kb on - strand, within Sama_0536 at 660.738 kb on + strand, within Sama_0536 at 660.738 kb on + strand, within Sama_0536 at 660.738 kb on + strand, within Sama_0536 at 660.739 kb on - strand, within Sama_0536 at 660.739 kb on - strand, within Sama_0536 at 660.739 kb on - strand, within Sama_0536 at 660.745 kb on + strand, within Sama_0536 at 660.745 kb on + strand, within Sama_0536 at 660.745 kb on + strand, within Sama_0536 at 660.745 kb on + strand, within Sama_0536 at 660.745 kb on + strand, within Sama_0536 at 660.746 kb on - strand, within Sama_0536 at 660.746 kb on - strand, within Sama_0536 at 660.746 kb on - strand, within Sama_0536 at 660.759 kb on + strand, within Sama_0536 at 660.759 kb on + strand, within Sama_0536 at 660.759 kb on + strand, within Sama_0536 at 660.772 kb on + strand, within Sama_0536 at 660.772 kb on + strand, within Sama_0536 at 660.772 kb on + strand, within Sama_0536 at 660.772 kb on + strand, within Sama_0536 at 660.772 kb on + strand, within Sama_0536 at 660.772 kb on + strand, within Sama_0536 at 660.772 kb on + strand, within Sama_0536 at 660.772 kb on + strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.773 kb on - strand, within Sama_0536 at 660.834 kb on + strand, within Sama_0536 at 660.834 kb on + strand, within Sama_0536 at 660.834 kb on + strand, within Sama_0536 at 660.834 kb on + strand, within Sama_0536 at 660.834 kb on + strand, within Sama_0536 at 660.835 kb on - strand, within Sama_0536 at 660.835 kb on - strand, within Sama_0536 at 660.835 kb on - strand, within Sama_0536 at 660.835 kb on - strand, within Sama_0536 at 660.855 kb on + strand, within Sama_0536 at 660.856 kb on - strand, within Sama_0536 at 660.856 kb on - strand, within Sama_0536 at 660.856 kb on - strand, within Sama_0536 at 661.072 kb on - strand, within Sama_0536 at 661.072 kb on - strand, within Sama_0536 at 661.076 kb on + strand, within Sama_0536 at 661.077 kb on - strand, within Sama_0536 at 661.077 kb on - strand, within Sama_0536 at 661.077 kb on - strand, within Sama_0536 at 661.077 kb on - strand, within Sama_0536 at 661.077 kb on - strand, within Sama_0536 at 661.081 kb on - strand, within Sama_0536 at 661.081 kb on - strand, within Sama_0536 at 661.081 kb on - strand, within Sama_0536
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 658,151 + Sama_0533 0.89 +2.0 658,151 + Sama_0533 0.89 +1.5 658,151 + Sama_0533 0.89 +2.9 658,151 + Sama_0533 0.89 +3.0 658,151 + Sama_0533 0.89 +2.4 658,151 + Sama_0533 0.89 +2.0 658,151 + Sama_0533 0.89 +3.1 658,151 + Sama_0533 0.89 +0.7 658,151 + Sama_0533 0.89 +1.6 658,151 + Sama_0533 0.89 -1.0 658,151 + Sama_0533 0.89 +2.6 658,151 + Sama_0533 0.89 +2.0 658,152 - Sama_0533 0.89 -1.0 658,152 - Sama_0533 0.89 +1.9 658,152 - Sama_0533 0.89 +2.2 658,152 - Sama_0533 0.89 +3.3 658,152 - Sama_0533 0.89 +2.0 658,152 - Sama_0533 0.89 +0.3 658,152 - Sama_0533 0.89 +2.1 658,152 - Sama_0533 0.89 +2.6 658,152 - Sama_0533 0.89 +2.0 658,152 - Sama_0533 0.89 +2.4 658,153 + Sama_0533 0.89 -1.1 658,153 + Sama_0533 0.89 -0.4 658,153 + Sama_0533 0.89 +0.8 658,153 + Sama_0533 0.89 -0.7 658,153 + Sama_0533 0.89 +2.3 658,153 + Sama_0533 0.89 +2.1 658,154 - Sama_0533 0.89 +1.3 658,154 - Sama_0533 0.89 -0.5 658,154 - Sama_0533 0.89 +2.5 658,154 - Sama_0533 0.89 +2.0 658,154 - Sama_0533 0.89 +2.1 658,191 - +1.6 658,191 - +1.5 658,253 - +2.6 658,293 + +0.8 658,325 + +0.6 658,326 - -0.4 658,353 - +0.7 658,383 + -0.5 658,384 - +2.2 658,384 - +0.9 658,389 + +1.2 658,412 + -0.9 658,467 + +1.9 658,475 + -0.5 658,480 + -2.3 658,480 + +0.8 658,480 + -0.7 658,480 + -2.1 658,480 + -2.0 658,480 + -0.6 658,480 + +0.6 658,480 + -0.1 658,480 + -0.7 658,481 - +0.6 658,481 - -1.0 658,481 - -2.0 658,481 - -0.7 658,481 - -2.6 658,481 - +1.9 658,481 - -0.7 658,491 + -1.3 658,491 + +0.8 658,491 + -0.7 658,491 + -1.3 658,491 + -0.7 658,492 - +0.7 658,492 - +0.2 658,492 - +1.6 658,492 - +2.0 658,493 + -1.9 658,493 + -2.5 658,493 + -0.6 658,493 + +0.3 658,494 - +0.0 658,494 - -0.2 658,494 - +0.0 658,494 - -1.5 658,494 - -1.1 658,498 + -2.6 658,499 - +0.0 658,506 + -2.0 658,506 + -1.0 658,506 + -0.2 658,506 + -1.7 658,506 + +1.0 658,506 + -2.1 658,506 + -0.7 658,506 + -0.8 658,506 + -1.3 658,506 + -0.4 658,506 + +0.6 658,506 + -2.0 658,506 + -0.5 658,507 - +2.7 658,507 - -1.4 658,507 - -2.3 658,507 - +1.3 658,507 - +1.9 658,507 - +0.9 658,507 - -1.6 658,507 - +0.2 658,507 - -2.0 658,507 - -2.1 658,507 - -2.0 658,508 + -0.7 658,508 + -0.2 658,508 + -0.5 658,508 + -1.7 658,508 + -2.9 658,508 + -0.4 658,508 + -0.8 658,508 + -1.4 658,508 + +2.3 658,508 + -1.4 658,508 + -0.9 658,508 + -2.2 658,508 + -1.7 658,508 + +1.3 658,508 + +0.6 658,508 + +2.5 658,508 + +0.6 658,508 + +2.8 658,508 + -1.4 658,508 + -0.3 658,508 + -0.6 658,508 + -1.4 658,508 + -0.3 658,508 + +1.0 658,508 + -0.1 658,509 - -0.4 658,509 - -0.6 658,509 - -0.6 658,509 - +3.0 658,509 - -2.6 658,509 - -0.9 658,509 - -2.8 658,509 - -1.8 658,509 - -1.3 658,509 - +1.2 658,509 - -0.7 658,509 - -0.4 658,509 - -1.3 658,509 - -0.7 658,509 - -2.4 658,509 - -1.9 658,509 - -2.0 658,512 + -0.7 658,512 + -1.4 658,512 + +1.8 658,512 + -1.3 658,512 + -1.2 658,512 + +0.7 658,512 + -0.7 658,512 + +1.0 658,512 + -1.3 658,512 + +0.1 658,512 + +1.0 658,512 + -1.6 658,512 + +0.6 658,512 + +0.3 658,512 + -1.6 658,512 + +0.6 658,512 + -0.0 658,512 + -3.0 658,512 + -1.4 658,512 + -0.2 658,512 + +2.3 658,512 + -0.3 658,513 - 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Or see this region's nucleotide sequence