Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aceF and Sama_0377 are separated by 170 nucleotides Sama_0377 and Sama_0378 are separated by 150 nucleotides
Sama_0376: aceF - dihydrolipoamide acetyltransferase (RefSeq), at 456,531 to 458,459
aceF
Sama_0377: Sama_0377 - dihydrolipoamide dehydrogenase (RefSeq), at 458,630 to 460,060
_0377
Sama_0378: Sama_0378 - sensory box protein (RefSeq), at 460,211 to 464,686
_0378
Position (kb) 458
459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 457.641 kb on + strand, within aceF at 457.642 kb on - strand, within aceF at 457.820 kb on + strand, within aceF at 458.043 kb on + strand, within aceF at 458.044 kb on - strand, within aceF at 458.044 kb on - strand, within aceF at 458.124 kb on + strand, within aceF at 458.124 kb on + strand, within aceF at 458.124 kb on + strand, within aceF at 458.180 kb on + strand, within aceF at 458.210 kb on + strand, within aceF at 458.211 kb on - strand, within aceF at 458.415 kb on + strand at 458.416 kb on - strand at 458.416 kb on - strand at 458.429 kb on - strand at 458.440 kb on + strand at 458.440 kb on + strand at 458.464 kb on - strand at 458.479 kb on + strand at 458.479 kb on + strand at 458.480 kb on - strand at 458.493 kb on + strand at 458.493 kb on + strand at 458.494 kb on - strand at 458.519 kb on + strand at 458.535 kb on + strand at 458.535 kb on + strand at 458.535 kb on + strand at 458.535 kb on + strand at 458.535 kb on + strand at 458.549 kb on + strand at 458.549 kb on + strand at 458.558 kb on + strand at 460.139 kb on + strand at 460.165 kb on - strand at 460.165 kb on - strand at 460.165 kb on - strand at 460.165 kb on - strand at 460.203 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.246 kb on - strand at 460.246 kb on - strand at 460.343 kb on - strand at 460.343 kb on - strand at 460.364 kb on + strand at 460.412 kb on - strand at 460.412 kb on - strand at 460.432 kb on - strand at 460.432 kb on - strand at 460.459 kb on + strand at 460.460 kb on - strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.502 kb on + strand at 460.502 kb on + strand at 460.502 kb on + strand at 460.502 kb on + strand at 460.502 kb on + strand at 460.503 kb on - strand at 460.503 kb on - strand at 460.518 kb on + strand at 460.518 kb on + strand at 460.519 kb on - strand at 460.519 kb on - strand at 460.519 kb on - strand at 460.532 kb on + strand at 460.539 kb on - strand at 460.543 kb on + strand at 460.543 kb on + strand at 460.544 kb on - strand at 460.544 kb on - strand at 460.544 kb on - strand at 460.555 kb on + strand at 460.555 kb on + strand at 460.555 kb on + strand at 460.555 kb on + strand at 460.556 kb on - strand at 460.556 kb on - strand at 460.556 kb on - strand at 460.556 kb on - strand at 460.585 kb on - strand at 460.585 kb on - strand at 460.596 kb on - strand at 460.612 kb on + strand at 460.711 kb on + strand, within Sama_0378 at 460.711 kb on + strand, within Sama_0378 at 460.711 kb on + strand, within Sama_0378 at 460.737 kb on + strand, within Sama_0378 at 460.737 kb on + strand, within Sama_0378 at 460.737 kb on + strand, within Sama_0378 at 460.738 kb on - strand, within Sama_0378 at 460.738 kb on - strand, within Sama_0378 at 460.738 kb on - strand, within Sama_0378 at 460.757 kb on + strand, within Sama_0378 at 460.757 kb on + strand, within Sama_0378 at 460.758 kb on - strand, within Sama_0378 at 460.786 kb on + strand, within Sama_0378 at 460.786 kb on + strand, within Sama_0378 at 460.786 kb on + strand, within Sama_0378 at 460.787 kb on - strand, within Sama_0378 at 460.839 kb on + strand, within Sama_0378 at 460.839 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.993 kb on + strand, within Sama_0378 at 461.011 kb on + strand, within Sama_0378 at 461.029 kb on + strand, within Sama_0378 at 461.030 kb on - strand, within Sama_0378
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 457,641 + aceF Sama_0376 0.58 +0.1 457,642 - aceF Sama_0376 0.58 +0.1 457,820 + aceF Sama_0376 0.67 -0.3 458,043 + aceF Sama_0376 0.78 -1.1 458,044 - aceF Sama_0376 0.78 +1.7 458,044 - aceF Sama_0376 0.78 +0.1 458,124 + aceF Sama_0376 0.83 -1.8 458,124 + aceF Sama_0376 0.83 +0.7 458,124 + aceF Sama_0376 0.83 -0.3 458,180 + aceF Sama_0376 0.85 -1.6 458,210 + aceF Sama_0376 0.87 +0.1 458,211 - aceF Sama_0376 0.87 -1.5 458,415 + -0.3 458,416 - +0.1 458,416 - +0.7 458,429 - +0.7 458,440 + -2.2 458,440 + -0.6 458,464 - -0.6 458,479 + -0.6 458,479 + -2.9 458,480 - -2.9 458,493 + -0.8 458,493 + -2.9 458,494 - -1.5 458,519 + +1.1 458,535 + +1.4 458,535 + +0.0 458,535 + -1.3 458,535 + -0.4 458,535 + -2.5 458,549 + -0.0 458,549 + +1.8 458,558 + -1.1 460,139 + +0.7 460,165 - +1.1 460,165 - +2.3 460,165 - -1.8 460,165 - +1.9 460,203 + -0.6 460,210 + -2.2 460,210 + -0.4 460,210 + +0.3 460,210 + +0.5 460,210 + +0.6 460,210 + -0.1 460,210 + -2.3 460,210 + -1.1 460,210 + +1.3 460,210 + +1.6 460,210 + -0.2 460,210 + -0.6 460,211 - -1.5 460,211 - -0.2 460,211 - -0.9 460,211 - -0.9 460,211 - -0.6 460,211 - +0.1 460,211 - -0.1 460,211 - -0.6 460,211 - -1.6 460,211 - +1.7 460,246 - +0.7 460,246 - -0.0 460,343 - -0.2 460,343 - +0.4 460,364 + +0.9 460,412 - +0.0 460,412 - -0.7 460,432 - -0.2 460,432 - +0.4 460,459 + -0.3 460,460 - -0.9 460,469 + -0.5 460,469 + -1.6 460,469 + -2.1 460,469 + -1.3 460,469 + +0.3 460,469 + +0.7 460,469 + +0.9 460,469 + -0.7 460,469 + -1.1 460,469 + -0.3 460,470 - -2.0 460,470 - -0.3 460,470 - +1.2 460,470 - -0.6 460,470 - -2.8 460,470 - +0.7 460,470 - +1.2 460,470 - +0.3 460,470 - +0.2 460,470 - +0.6 460,470 - +1.1 460,473 + +0.7 460,473 + -0.8 460,473 + -1.0 460,473 + -0.2 460,473 + -0.9 460,473 + +1.7 460,473 + +1.7 460,473 + -0.0 460,473 + +0.4 460,473 + -1.0 460,474 - -0.1 460,474 - -2.1 460,474 - -1.3 460,474 - -2.5 460,474 - +1.7 460,474 - +0.1 460,474 - -0.8 460,502 + +1.7 460,502 + -0.0 460,502 + -0.2 460,502 + -0.3 460,502 + +0.3 460,503 - +1.0 460,503 - -1.5 460,518 + +0.8 460,518 + +0.6 460,519 - -0.6 460,519 - -0.6 460,519 - -0.9 460,532 + -2.1 460,539 - -0.7 460,543 + +0.6 460,543 + +1.5 460,544 - +1.4 460,544 - +1.4 460,544 - +0.6 460,555 + +2.7 460,555 + +0.1 460,555 + -1.5 460,555 + +0.0 460,556 - +0.9 460,556 - -1.5 460,556 - -0.5 460,556 - +0.7 460,585 - -1.0 460,585 - -1.1 460,596 - +0.8 460,612 + -1.2 460,711 + Sama_0378 0.11 +0.2 460,711 + Sama_0378 0.11 -1.3 460,711 + Sama_0378 0.11 -0.6 460,737 + Sama_0378 0.12 +1.4 460,737 + Sama_0378 0.12 +3.1 460,737 + Sama_0378 0.12 +1.8 460,738 - Sama_0378 0.12 -0.0 460,738 - Sama_0378 0.12 +1.0 460,738 - Sama_0378 0.12 -0.9 460,757 + Sama_0378 0.12 -1.5 460,757 + Sama_0378 0.12 -0.2 460,758 - Sama_0378 0.12 +0.7 460,786 + Sama_0378 0.13 +1.6 460,786 + Sama_0378 0.13 -0.4 460,786 + Sama_0378 0.13 -1.0 460,787 - Sama_0378 0.13 -0.5 460,839 + Sama_0378 0.14 -0.6 460,839 + Sama_0378 0.14 +0.5 460,979 + Sama_0378 0.17 +1.0 460,979 + Sama_0378 0.17 -2.0 460,979 + Sama_0378 0.17 +0.7 460,979 + Sama_0378 0.17 -0.3 460,979 + Sama_0378 0.17 +0.3 460,980 - Sama_0378 0.17 -1.1 460,980 - Sama_0378 0.17 -0.2 460,980 - Sama_0378 0.17 +2.2 460,980 - Sama_0378 0.17 -2.5 460,980 - Sama_0378 0.17 +0.1 460,980 - Sama_0378 0.17 -1.7 460,980 - Sama_0378 0.17 +0.1 460,980 - Sama_0378 0.17 -1.1 460,980 - Sama_0378 0.17 -0.6 460,993 + Sama_0378 0.17 +0.2 461,011 + Sama_0378 0.18 -2.8 461,029 + Sama_0378 0.18 +0.1 461,030 - Sama_0378 0.18 +2.1
Or see this region's nucleotide sequence